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Results: 1 to 20 of 130

1.

Genome-wide analysis of tandem repeats in Daphnia pulex--a comparative approach.

Mayer C, Leese F, Tollrian R.

BMC Genomics. 2010 Apr 30;11:277. doi: 10.1186/1471-2164-11-277.

PMID:
20433735
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Simple sequence repeat variation in the Daphnia pulex genome.

Sung W, Tucker A, Bergeron RD, Lynch M, Thomas WK.

BMC Genomics. 2010 Dec 3;11:691. doi: 10.1186/1471-2164-11-691.

PMID:
21129182
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Analysis of tandem repeats found in 44 prokaryotic genomes.

Mizuta S, Munakata H, Aimaiti A, Oya I, Oosawa K, Shimizu T.

In Silico Biol. 2006;6(1-2):147-59.

PMID:
17009421
[PubMed - indexed for MEDLINE]
4.

Enrichment of transcriptional regulatory sites in non-coding genomic region.

Xue W, Wang J, Shen Z, Zhu H.

Bioinformatics. 2004 Mar 1;20(4):569-75. Epub 2004 Jan 22.

PMID:
14990453
[PubMed - indexed for MEDLINE]
Free Article
5.

MGEScan-non-LTR: computational identification and classification of autonomous non-LTR retrotransposons in eukaryotic genomes.

Rho M, Tang H.

Nucleic Acids Res. 2009 Nov;37(21):e143. doi: 10.1093/nar/gkp752. Epub .

PMID:
19762481
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Genome-wide analysis of tandem repeats in plants and green algae.

Zhao Z, Guo C, Sutharzan S, Li P, Echt CS, Zhang J, Liang C.

G3 (Bethesda). 2014 Jan 10;4(1):67-78. doi: 10.1534/g3.113.008524.

PMID:
24192840
[PubMed - in process]
Free PMC Article
7.

Partial mitochondrial DNA sequence of the crustacean Daphnia pulex.

Van Raay TJ, Crease TJ.

Curr Genet. 1994 Jan;25(1):66-72.

PMID:
8082168
[PubMed - indexed for MEDLINE]
8.

Database of exact tandem repeats in the Zebrafish genome.

Rouchka EC.

BMC Genomics. 2010 Jun 1;11:347. doi: 10.1186/1471-2164-11-347.

PMID:
20515480
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

LTR retroelements in the genome of Daphnia pulex.

Rho M, Schaack S, Gao X, Kim S, Lynch M, Tang H.

BMC Genomics. 2010 Jul 9;11:425. doi: 10.1186/1471-2164-11-425.

PMID:
20618961
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Transcontinental phylogeography of the Daphnia pulex species complex.

Crease TJ, Omilian AR, Costanzo KS, Taylor DJ.

PLoS One. 2012;7(10):e46620. doi: 10.1371/journal.pone.0046620. Epub 2012 Oct 3.

PMID:
23056371
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Reticulate evolution of the Daphnia pulex complex as revealed by nuclear markers.

Vergilino R, Markova S, Ventura M, Manca M, Dufresne F.

Mol Ecol. 2011 Mar;20(6):1191-207. doi: 10.1111/j.1365-294X.2011.05004.x. Epub 2011 Feb 5.

PMID:
21294799
[PubMed - indexed for MEDLINE]
12.

Assessing the role of tandem repeats in shaping the genomic architecture of great apes.

Farré M, Bosch M, López-Giráldez F, Ponsà M, Ruiz-Herrera A.

PLoS One. 2011;6(11):e27239. doi: 10.1371/journal.pone.0027239. Epub 2011 Nov 4.

PMID:
22076140
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

The cytochrome P450 (CYP) gene superfamily in Daphnia pulex.

Baldwin WS, Marko PB, Nelson DR.

BMC Genomics. 2009 Apr 21;10:169. doi: 10.1186/1471-2164-10-169.

PMID:
19383150
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

A software program combining sequence motif searches with keywords for finding repeats containing DNA sequences.

Bilgen M, Karaca M, Onus AN, Ince AG.

Bioinformatics. 2004 Dec 12;20(18):3379-86. Epub 2004 Jul 15.

PMID:
15256410
[PubMed - indexed for MEDLINE]
Free Article
15.

Pause-melting misalignment: a novel model for the birth and motif indel of tandem repeats in the mitochondrial genome.

Shi W, Kong XY, Wang ZM, Yu SS, Chen HX, De Stasio EA.

BMC Genomics. 2013 Feb 15;14:103. doi: 10.1186/1471-2164-14-103.

PMID:
23414101
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Exploring Pandora's box: potential and pitfalls of low coverage genome surveys for evolutionary biology.

Leese F, Brand P, Rozenberg A, Mayer C, Agrawal S, Dambach J, Dietz L, Doemel JS, Goodall-Copstake WP, Held C, Jackson JA, Lampert KP, Linse K, Macher JN, Nolzen J, Raupach MJ, Rivera NT, Schubart CD, Striewski S, Tollrian R, Sands CJ.

PLoS One. 2012;7(11):e49202. doi: 10.1371/journal.pone.0049202. Epub 2012 Nov 21.

PMID:
23185309
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Evolutionary dynamics of microsatellite distribution in plants: insight from the comparison of sequenced brassica, Arabidopsis and other angiosperm species.

Shi J, Huang S, Fu D, Yu J, Wang X, Hua W, Liu S, Liu G, Wang H.

PLoS One. 2013;8(3):e59988. doi: 10.1371/journal.pone.0059988. Epub 2013 Mar 28.

PMID:
23555856
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Patterns of intraspecific DNA variation in the Daphnia nuclear genome.

Omilian AR, Lynch M.

Genetics. 2009 May;182(1):325-36. doi: 10.1534/genetics.108.099549. Epub 2009 Mar 19.

PMID:
19304589
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Sequence of the intergenic spacer between the 28S and 18S rRNA-encoding genes of the crustacean, Daphnia pulex.

Crease TJ.

Gene. 1993 Dec 8;134(2):245-9.

PMID:
7916723
[PubMed - indexed for MEDLINE]
20.

Distribution and abundance of microsatellites in the genome of bivalves.

Cruz F, Pérez M, Presa P.

Gene. 2005 Feb 14;346:241-7.

PMID:
15716000
[PubMed - indexed for MEDLINE]

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