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Items: 1 to 20 of 90

1.

Mining mammalian transcript data for functional long non-coding RNAs.

Khachane AN, Harrison PM.

PLoS One. 2010 Apr 23;5(4):e10316. doi: 10.1371/journal.pone.0010316.

2.

Long non-coding RNAs: Guardians of development.

van Leeuwen S, Mikkers H.

Differentiation. 2010 Nov-Dec;80(4-5):175-83. doi: 10.1016/j.diff.2010.07.003. Epub 2010 Aug 11. Review.

PMID:
20705382
3.

Identification of long non-protein coding RNAs in chicken skeletal muscle using next generation sequencing.

Li T, Wang S, Wu R, Zhou X, Zhu D, Zhang Y.

Genomics. 2012 May;99(5):292-8. doi: 10.1016/j.ygeno.2012.02.003. Epub 2012 Feb 20.

4.

MacroRNA underdogs in a microRNA world: evolutionary, regulatory, and biomedical significance of mammalian long non-protein-coding RNA.

Lipovich L, Johnson R, Lin CY.

Biochim Biophys Acta. 2010 Sep;1799(9):597-615. doi: 10.1016/j.bbagrm.2010.10.001. Epub 2010 Oct 14. Review. Erratum in: Biochim Biophys Acta. 2011 Jan;1809(1):63.

PMID:
20951849
5.
6.

[Transcriptome and non-coding RNAs: so many mRNA-like non-coding RNAs are really functional?].

Kanai A.

Tanpakushitsu Kakusan Koso. 2004 Dec;49(16):2521-8. Review. Japanese. No abstract available.

PMID:
15609715
7.

An Ariadne's thread to the identification and annotation of noncoding RNAs in eukaryotes.

Soldà G, Makunin IV, Sezerman OU, Corradin A, Corti G, Guffanti A.

Brief Bioinform. 2009 Sep;10(5):475-89. doi: 10.1093/bib/bbp022. Epub 2009 Apr 21. Review.

8.

Non-coding transcription characterization and annotation: a guide and web resource for non-coding RNA databases.

Paschoal AR, Maracaja-Coutinho V, Setubal JC, Simões ZL, Verjovski-Almeida S, Durham AM.

RNA Biol. 2012 Mar;9(3):274-82. doi: 10.4161/rna.19352. Epub 2012 Mar 1. Review.

PMID:
22336709
9.

Numerous potentially functional but non-genic conserved sequences on human chromosome 21.

Dermitzakis ET, Reymond A, Lyle R, Scamuffa N, Ucla C, Deutsch S, Stevenson BJ, Flegel V, Bucher P, Jongeneel CV, Antonarakis SE.

Nature. 2002 Dec 5;420(6915):578-82.

PMID:
12466853
10.

Prediction of novel long non-coding RNAs based on RNA-Seq data of mouse Klf1 knockout study.

Sun L, Zhang Z, Bailey TL, Perkins AC, Tallack MR, Xu Z, Liu H.

BMC Bioinformatics. 2012 Dec 13;13:331. doi: 10.1186/1471-2105-13-331.

11.

Noncoding RNA transcription beyond annotated genes.

Carninci P, Hayashizaki Y.

Curr Opin Genet Dev. 2007 Apr;17(2):139-44. Epub 2007 Feb 20. Review.

PMID:
17317145
12.

Conserved introns reveal novel transcripts in Drosophila melanogaster.

Hiller M, Findeiss S, Lein S, Marz M, Nickel C, Rose D, Schulz C, Backofen R, Prohaska SJ, Reuter G, Stadler PF.

Genome Res. 2009 Jul;19(7):1289-300. doi: 10.1101/gr.090050.108. Epub 2009 May 20.

13.

Non-coding RNAs: Meet thy masters.

Costa FF.

Bioessays. 2010 Jul;32(7):599-608. doi: 10.1002/bies.200900112. Review.

PMID:
20544733
14.

Comparative genomics as a tool for gene discovery.

Windsor AJ, Mitchell-Olds T.

Curr Opin Biotechnol. 2006 Apr;17(2):161-7. Epub 2006 Feb 3. Review.

PMID:
16459073
15.

Computational methods in noncoding RNA research.

Machado-Lima A, del Portillo HA, Durham AM.

J Math Biol. 2008 Jan;56(1-2):15-49. Epub 2007 Sep 4. Review.

PMID:
17786447
16.

Computational RNomics: structure identification and functional prediction of non-coding RNAs in silico.

Zheng L, Qu L.

Sci China Life Sci. 2010 May;53(5):548-62. doi: 10.1007/s11427-010-0101-9. Epub 2010 May 23. Review.

PMID:
20596938
17.

Biocomputational prediction of non-coding RNAs in model cyanobacteria.

Voss B, Georg J, Schön V, Ude S, Hess WR.

BMC Genomics. 2009 Mar 23;10:123. doi: 10.1186/1471-2164-10-123.

18.

Constructing the landscape of the mammalian transcriptome.

Carninci P.

J Exp Biol. 2007 May;210(Pt 9):1497-506.

19.

Computational analysis of functional long noncoding RNAs reveals lack of peptide-coding capacity and parallels with 3' UTRs.

Niazi F, Valadkhan S.

RNA. 2012 Apr;18(4):825-43. doi: 10.1261/rna.029520.111. Epub 2012 Feb 23.

20.

Clusters of internally primed transcripts reveal novel long noncoding RNAs.

Furuno M, Pang KC, Ninomiya N, Fukuda S, Frith MC, Bult C, Kai C, Kawai J, Carninci P, Hayashizaki Y, Mattick JS, Suzuki H.

PLoS Genet. 2006 Apr;2(4):e37. Epub 2006 Apr 28.

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