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Diverse pathways generate microRNA-like RNAs and Dicer-independent small interfering RNAs in fungi.

Lee HC, Li L, Gu W, Xue Z, Crosthwaite SK, Pertsemlidis A, Lewis ZA, Freitag M, Selker EU, Mello CC, Liu Y.

Mol Cell. 2010 Jun 25;38(6):803-14. doi: 10.1016/j.molcel.2010.04.005. Epub 2010 Apr 22.


qiRNA is a new type of small interfering RNA induced by DNA damage.

Lee HC, Chang SS, Choudhary S, Aalto AP, Maiti M, Bamford DH, Liu Y.

Nature. 2009 May 14;459(7244):274-7. doi: 10.1038/nature08041.


RNA interference in fungi: pathways, functions, and applications.

Dang Y, Yang Q, Xue Z, Liu Y.

Eukaryot Cell. 2011 Sep;10(9):1148-55. doi: 10.1128/EC.05109-11. Epub 2011 Jul 1. Review.


Reconstitution of an Argonaute-dependent small RNA biogenesis pathway reveals a handover mechanism involving the RNA exosome and the exonuclease QIP.

Xue Z, Yuan H, Guo J, Liu Y.

Mol Cell. 2012 May 11;46(3):299-310. doi: 10.1016/j.molcel.2012.03.019. Epub 2012 Apr 17.


Dicer-Dependent Biogenesis of Small RNAs and Evidence for MicroRNA-Like RNAs in the Penicillin Producing Fungus Penicillium chrysogenum.

Dahlmann TA, Kück U.

PLoS One. 2015 May 8;10(5):e0125989. doi: 10.1371/journal.pone.0125989. eCollection 2015.


Diverse small non-coding RNAs in RNA interference pathways.

Li L, Liu Y.

Methods Mol Biol. 2011;764:169-82. doi: 10.1007/978-1-61779-188-8_11. Review.


Transcription of the major neurospora crassa microRNA-like small RNAs relies on RNA polymerase III.

Yang Q, Li L, Xue Z, Ye Q, Zhang L, Li S, Liu Y.

PLoS Genet. 2013;9(1):e1003227. doi: 10.1371/journal.pgen.1003227. Epub 2013 Jan 17.


Exploring microRNA-like small RNAs in the filamentous fungus Fusarium oxysporum.

Chen R, Jiang N, Jiang Q, Sun X, Wang Y, Zhang H, Hu Z.

PLoS One. 2014 Aug 20;9(8):e104956. doi: 10.1371/journal.pone.0104956. eCollection 2014.


Redundancy of the two dicer genes in transgene-induced posttranscriptional gene silencing in Neurospora crassa.

Catalanotto C, Pallotta M, ReFalo P, Sachs MS, Vayssie L, Macino G, Cogoni C.

Mol Cell Biol. 2004 Mar;24(6):2536-45.


A three-dimensional view of the molecular machinery of RNA interference.

Jinek M, Doudna JA.

Nature. 2009 Jan 22;457(7228):405-12. doi: 10.1038/nature07755. Review.


Endogenous short RNAs generated by Dicer 2 and RNA-dependent RNA polymerase 1 regulate mRNAs in the basal fungus Mucor circinelloides.

Nicolas FE, Moxon S, de Haro JP, Calo S, Grigoriev IV, Torres-Martínez S, Moulton V, Ruiz-Vázquez RM, Dalmay T.

Nucleic Acids Res. 2010 Sep;38(16):5535-41. doi: 10.1093/nar/gkq301. Epub 2010 Apr 28.


A double-stranded-RNA response program important for RNA interference efficiency.

Choudhary S, Lee HC, Maiti M, He Q, Cheng P, Liu Q, Liu Y.

Mol Cell Biol. 2007 Jun;27(11):3995-4005. Epub 2007 Mar 19.


Molecular mechanisms that funnel RNA precursors into endogenous small-interfering RNA and microRNA biogenesis pathways in Drosophila.

Miyoshi K, Miyoshi T, Hartig JV, Siomi H, Siomi MC.

RNA. 2010 Mar;16(3):506-15. doi: 10.1261/rna.1952110. Epub 2010 Jan 19.


RNA silencing in fungi: mechanisms and applications.

Nakayashiki H.

FEBS Lett. 2005 Oct 31;579(26):5950-7. Epub 2005 Aug 24. Review.


Identification of microRNA-like RNAs in mycelial and yeast phases of the thermal dimorphic fungus Penicillium marneffei.

Lau SK, Chow WN, Wong AY, Yeung JM, Bao J, Zhang N, Lok S, Woo PC, Yuen KY.

PLoS Negl Trop Dis. 2013 Aug 22;7(8):e2398. doi: 10.1371/journal.pntd.0002398. eCollection 2013.


TRBP recruits the Dicer complex to Ago2 for microRNA processing and gene silencing.

Chendrimada TP, Gregory RI, Kumaraswamy E, Norman J, Cooch N, Nishikura K, Shiekhattar R.

Nature. 2005 Aug 4;436(7051):740-4. Epub 2005 Jun 22.


MicroRNA-independent roles of the RNase III enzymes Drosha and Dicer.

Johanson TM, Lew AM, Chong MM.

Open Biol. 2013 Oct 23;3(10):130144. doi: 10.1098/rsob.130144. Review.


A complex small RNA repertoire is generated by a plant/fungal-like machinery and effected by a metazoan-like Argonaute in the single-cell human parasite Toxoplasma gondii.

Braun L, Cannella D, Ortet P, Barakat M, Sautel CF, Kieffer S, Garin J, Bastien O, Voinnet O, Hakimi MA.

PLoS Pathog. 2010 May 27;6(5):e1000920. doi: 10.1371/journal.ppat.1000920.

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