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Results: 1 to 20 of 142

1.

Genome-scale metabolic analysis of Clostridium thermocellum for bioethanol production.

Roberts SB, Gowen CM, Brooks JP, Fong SS.

BMC Syst Biol. 2010 Mar 22;4:31. doi: 10.1186/1752-0509-4-31.

PMID:
20307315
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Impact of pretreated Switchgrass and biomass carbohydrates on Clostridium thermocellum ATCC 27405 cellulosome composition: a quantitative proteomic analysis.

Raman B, Pan C, Hurst GB, Rodriguez M Jr, McKeown CK, Lankford PK, Samatova NF, Mielenz JR.

PLoS One. 2009;4(4):e5271. doi: 10.1371/journal.pone.0005271. Epub 2009 Apr 22.

PMID:
19384422
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Clostridium thermocellum ATCC27405 transcriptomic, metabolomic and proteomic profiles after ethanol stress.

Yang S, Giannone RJ, Dice L, Yang ZK, Engle NL, Tschaplinski TJ, Hettich RL, Brown SD.

BMC Genomics. 2012 Jul 23;13:336. doi: 10.1186/1471-2164-13-336.

PMID:
22823947
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Genome-scale metabolic model integrated with RNAseq data to identify metabolic states of Clostridium thermocellum.

Gowen CM, Fong SS.

Biotechnol J. 2010 Jul;5(7):759-67. doi: 10.1002/biot.201000084. Erratum in: Biotechnol J. 2010 Sep;5(9):994.

PMID:
20665646
[PubMed - indexed for MEDLINE]
5.

Transcriptomic analysis of Clostridium thermocellum ATCC 27405 cellulose fermentation.

Raman B, McKeown CK, Rodriguez M Jr, Brown SD, Mielenz JR.

BMC Microbiol. 2011 Jun 14;11:134. doi: 10.1186/1471-2180-11-134.

PMID:
21672225
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Proteomic analysis of Clostridium thermocellum ATCC 27405 reveals the upregulation of an alternative transhydrogenase-malate pathway and nitrogen assimilation in cells grown on cellulose.

Burton E, Martin VJ.

Can J Microbiol. 2012 Dec;58(12):1378-88. doi: 10.1139/cjm-2012-0412. Epub 2012 Nov 1.

PMID:
23210995
[PubMed - indexed for MEDLINE]
7.

Draft genome sequences for Clostridium thermocellum wild-type strain YS and derived cellulose adhesion-defective mutant strain AD2.

Brown SD, Lamed R, Morag E, Borovok I, Shoham Y, Klingeman DM, Johnson CM, Yang Z, Land ML, Utturkar SM, Keller M, Bayer EA.

J Bacteriol. 2012 Jun;194(12):3290-1. doi: 10.1128/JB.00473-12.

PMID:
22628515
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Expression of 17 genes in Clostridium thermocellum ATCC 27405 during fermentation of cellulose or cellobiose in continuous culture.

Stevenson DM, Weimer PJ.

Appl Environ Microbiol. 2005 Aug;71(8):4672-8.

PMID:
16085862
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Mutant selection and phenotypic and genetic characterization of ethanol-tolerant strains of Clostridium thermocellum.

Shao X, Raman B, Zhu M, Mielenz JR, Brown SD, Guss AM, Lynd LR.

Appl Microbiol Biotechnol. 2011 Nov;92(3):641-52. doi: 10.1007/s00253-011-3492-z. Epub 2011 Aug 27.

PMID:
21874277
[PubMed - indexed for MEDLINE]
10.

Metabolic network reconstruction and genome-scale model of butanol-producing strain Clostridium beijerinckii NCIMB 8052.

Milne CB, Eddy JA, Raju R, Ardekani S, Kim PJ, Senger RS, Jin YS, Blaschek HP, Price ND.

BMC Syst Biol. 2011 Aug 16;5:130. doi: 10.1186/1752-0509-5-130.

PMID:
21846360
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Construction and evaluation of a Clostridium thermocellum ATCC 27405 whole-genome oligonucleotide microarray.

Brown SD, Raman B, McKeown CK, Kale SP, He Z, Mielenz JR.

Appl Biochem Biotechnol. 2007 Apr;137-140(1-12):663-74. doi: 10.1007/s12010-007-9087-6.

PMID:
18478424
[PubMed - indexed for MEDLINE]
12.

Draft genome sequence of the cellulolytic Clostridium thermocellum wild-type strain BC1 playing a role in cellulosic biomass degradation.

Koeck DE, Wibberg D, Koellmeier T, Blom J, Jaenicke S, Winkler A, Albersmeier A, Zverlov VV, Pühler A, Schwarz WH, Schlüter A.

J Biotechnol. 2013 Oct 10;168(1):62-3. doi: 10.1016/j.jbiotec.2013.08.011. Epub 2013 Aug 19.

PMID:
23968723
[PubMed - indexed for MEDLINE]
13.

High ethanol titers from cellulose by using metabolically engineered thermophilic, anaerobic microbes.

Argyros DA, Tripathi SA, Barrett TF, Rogers SR, Feinberg LF, Olson DG, Foden JM, Miller BB, Lynd LR, Hogsett DA, Caiazza NC.

Appl Environ Microbiol. 2011 Dec;77(23):8288-94. doi: 10.1128/AEM.00646-11. Epub 2011 Sep 30.

PMID:
21965408
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Isolation and characterization of two thermophilic cellulolytic strains of Clostridium thermocellum from a compost sample.

Lv W, Yu Z.

J Appl Microbiol. 2013 Apr;114(4):1001-7. doi: 10.1111/jam.12112. Epub 2013 Jan 11.

PMID:
23279216
[PubMed - indexed for MEDLINE]
15.

Ethanol-tolerant gene identification in Clostridium thermocellum using pyro-resequencing for metabolic engineering.

Yang S, Klingeman DM, Brown SD.

Methods Mol Biol. 2012;834:111-36. doi: 10.1007/978-1-61779-483-4_9.

PMID:
22144357
[PubMed - indexed for MEDLINE]
16.

Proteomic analysis of Clostridium thermocellum core metabolism: relative protein expression profiles and growth phase-dependent changes in protein expression.

Rydzak T, McQueen PD, Krokhin OV, Spicer V, Ezzati P, Dwivedi RC, Shamshurin D, Levin DB, Wilkins JA, Sparling R.

BMC Microbiol. 2012 Sep 21;12:214. doi: 10.1186/1471-2180-12-214.

PMID:
22994686
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Characterization of Clostridium thermocellum strains with disrupted fermentation end-product pathways.

van der Veen D, Lo J, Brown SD, Johnson CM, Tschaplinski TJ, Martin M, Engle NL, van den Berg RA, Argyros AD, Caiazza NC, Guss AM, Lynd LR.

J Ind Microbiol Biotechnol. 2013 Jul;40(7):725-34. doi: 10.1007/s10295-013-1275-5. Epub 2013 May 5.

PMID:
23645383
[PubMed - indexed for MEDLINE]
18.

Formation and characterization of non-growth states in Clostridium thermocellum: spores and L-forms.

Mearls EB, Izquierdo JA, Lynd LR.

BMC Microbiol. 2012 Aug 16;12:180. doi: 10.1186/1471-2180-12-180.

PMID:
22897981
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Genome-scale modeling and in silico analysis of ethanologenic bacteria Zymomonas mobilis.

Widiastuti H, Kim JY, Selvarasu S, Karimi IA, Kim H, Seo JS, Lee DY.

Biotechnol Bioeng. 2011 Mar;108(3):655-65. doi: 10.1002/bit.22965. Epub 2010 Nov 10.

PMID:
20967753
[PubMed - indexed for MEDLINE]
20.

Global gene expression patterns in Clostridium thermocellum as determined by microarray analysis of chemostat cultures on cellulose or cellobiose.

Riederer A, Takasuka TE, Makino S, Stevenson DM, Bukhman YV, Elsen NL, Fox BG.

Appl Environ Microbiol. 2011 Feb;77(4):1243-53. doi: 10.1128/AEM.02008-10. Epub 2010 Dec 17.

PMID:
21169455
[PubMed - indexed for MEDLINE]
Free PMC Article

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