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Items: 1 to 20 of 107

1.

Proteogenomics of Pristionchus pacificus reveals distinct proteome structure of nematode models.

Borchert N, Dieterich C, Krug K, Schütz W, Jung S, Nordheim A, Sommer RJ, Macek B.

Genome Res. 2010 Jun;20(6):837-46. doi: 10.1101/gr.103119.109. Epub 2010 Mar 17.

2.

Phosphoproteome of Pristionchus pacificus provides insights into architecture of signaling networks in nematode models.

Borchert N, Krug K, Gnad F, Sinha A, Sommer RJ, Macek B.

Mol Cell Proteomics. 2012 Dec;11(12):1631-9. doi: 10.1074/mcp.M112.022103. Epub 2012 Aug 25.

4.

AppaDB: an AcedB database for the nematode satellite organism Pristionchus pacificus.

Srinivasan J, Otto GW, Kahlow U, Geisler R, Sommer RJ.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D421-2.

5.

Computational archaeology of the Pristionchus pacificus genome reveals evidence of horizontal gene transfers from insects.

Rödelsperger C, Sommer RJ.

BMC Evol Biol. 2011 Aug 15;11:239. doi: 10.1186/1471-2148-11-239.

6.

Pristionchus.org: a genome-centric database of the nematode satellite species Pristionchus pacificus.

Dieterich C, Roeseler W, Sobetzko P, Sommer RJ.

Nucleic Acids Res. 2007 Jan;35(Database issue):D498-502. Epub 2006 Oct 24.

7.

Mutation rates and intraspecific divergence of the mitochondrial genome of Pristionchus pacificus.

Molnar RI, Bartelmes G, Dinkelacker I, Witte H, Sommer RJ.

Mol Biol Evol. 2011 Aug;28(8):2317-26. doi: 10.1093/molbev/msr057. Epub 2011 Mar 2.

8.

The Caenorhabditis globin gene family reveals extensive nematode-specific radiation and diversification.

Hoogewijs D, De Henau S, Dewilde S, Moens L, Couvreur M, Borgonie G, Vinogradov SN, Roy SW, Vanfleteren JR.

BMC Evol Biol. 2008 Oct 9;8:279. doi: 10.1186/1471-2148-8-279.

9.

Expressional and functional variation of horizontally acquired cellulases in the nematode Pristionchus pacificus.

Schuster LN, Sommer RJ.

Gene. 2012 Sep 15;506(2):274-82. doi: 10.1016/j.gene.2012.07.013. Epub 2012 Jul 17.

PMID:
22814175
10.

The Pristionchus pacificus genome provides a unique perspective on nematode lifestyle and parasitism.

Dieterich C, Clifton SW, Schuster LN, Chinwalla A, Delehaunty K, Dinkelacker I, Fulton L, Fulton R, Godfrey J, Minx P, Mitreva M, Roeseler W, Tian H, Witte H, Yang SP, Wilson RK, Sommer RJ.

Nat Genet. 2008 Oct;40(10):1193-8. doi: 10.1038/ng.227. Epub 2008 Sep 21.

11.

A bacterial artificial chromosome-based genetic linkage map of the nematode Pristionchus pacificus.

Srinivasan J, Sinz W, Lanz C, Brand A, Nandakumar R, Raddatz G, Witte H, Keller H, Kipping I, Pires-daSilva A, Jesse T, Millare J, de Both M, Schuster SC, Sommer RJ.

Genetics. 2002 Sep;162(1):129-34.

12.

Mass spectrometry at the interface of proteomics and genomics.

Krug K, Nahnsen S, Macek B.

Mol Biosyst. 2011 Feb;7(2):284-91. doi: 10.1039/c0mb00168f. Epub 2010 Oct 21. Review.

PMID:
20967315
13.

Pristionchus pacificus: a well-rounded nematode.

Hong RL, Sommer RJ.

Bioessays. 2006 Jun;28(6):651-9.

PMID:
16700067
14.
15.

Limited microsynteny between the genomes of Pristionchus pacificus and Caenorhabditis elegans.

Lee KZ, Eizinger A, Nandakumar R, Schuster SC, Sommer RJ.

Nucleic Acids Res. 2003 May 15;31(10):2553-60.

16.

OryzaPG-DB: rice proteome database based on shotgun proteogenomics.

Helmy M, Tomita M, Ishihama Y.

BMC Plant Biol. 2011 Apr 12;11:63. doi: 10.1186/1471-2229-11-63.

17.

Tandem-repeat patterns and mutation rates in microsatellites of the nematode model organism Pristionchus pacificus.

Molnar RI, Witte H, Dinkelacker I, Villate L, Sommer RJ.

G3 (Bethesda). 2012 Sep;2(9):1027-34. doi: 10.1534/g3.112.003129. Epub 2012 Sep 1.

18.

Genome-wide analysis of trans-splicing in the nematode Pristionchus pacificus unravels conserved gene functions for germline and dauer development in divergent operons.

Sinha A, Langnick C, Sommer RJ, Dieterich C.

RNA. 2014 Sep;20(9):1386-97. doi: 10.1261/rna.041954.113. Epub 2014 Jul 11.

19.

Repertoire and evolution of miRNA genes in four divergent nematode species.

de Wit E, Linsen SE, Cuppen E, Berezikov E.

Genome Res. 2009 Nov;19(11):2064-74. doi: 10.1101/gr.093781.109. Epub 2009 Sep 15.

20.

Discovery and annotation of small proteins using genomics, proteomics, and computational approaches.

Yang X, Tschaplinski TJ, Hurst GB, Jawdy S, Abraham PE, Lankford PK, Adams RM, Shah MB, Hettich RL, Lindquist E, Kalluri UC, Gunter LE, Pennacchio C, Tuskan GA.

Genome Res. 2011 Apr;21(4):634-41. doi: 10.1101/gr.109280.110. Epub 2011 Mar 2.

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