Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Results: 1 to 20 of 53

1.
2.

Predicting DNA recognition by Cys2His2 zinc finger proteins.

Persikov AV, Osada R, Singh M.

Bioinformatics. 2009 Jan 1;25(1):22-9. doi: 10.1093/bioinformatics/btn580. Epub 2008 Nov 13.

PMID:
19008249
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Diffusion kernel-based logistic regression models for protein function prediction.

Lee H, Tu Z, Deng M, Sun F, Chen T.

OMICS. 2006 Spring;10(1):40-55.

PMID:
16584317
[PubMed - indexed for MEDLINE]
4.

DNA-binding residues and binding mode prediction with binding-mechanism concerned models.

Huang YF, Huang CC, Liu YC, Oyang YJ, Huang CK.

BMC Genomics. 2009 Dec 3;10 Suppl 3:S23. doi: 10.1186/1471-2164-10-S3-S23.

PMID:
19958487
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Using evolutionary and structural information to predict DNA-binding sites on DNA-binding proteins.

Kuznetsov IB, Gou Z, Li R, Hwang S.

Proteins. 2006 Jul 1;64(1):19-27.

PMID:
16568445
[PubMed - indexed for MEDLINE]
6.

Efficient prediction of nucleic acid binding function from low-resolution protein structures.

Szilágyi A, Skolnick J.

J Mol Biol. 2006 May 5;358(3):922-33. Epub 2006 Mar 10.

PMID:
16551468
[PubMed - indexed for MEDLINE]
7.

A novel sequence-based method of predicting protein DNA-binding residues, using a machine learning approach.

Cai Y, He Z, Shi X, Kong X, Gu L, Xie L.

Mol Cells. 2010 Aug;30(2):99-105. doi: 10.1007/s10059-010-0093-0. Epub 2010 Jul 23.

PMID:
20706794
[PubMed - indexed for MEDLINE]
Free Article
8.

Accurate prediction of solvent accessibility using neural networks-based regression.

Adamczak R, Porollo A, Meller J.

Proteins. 2004 Sep 1;56(4):753-67.

PMID:
15281128
[PubMed - indexed for MEDLINE]
9.

Improve the prediction of RNA-binding residues using structural neighbours.

Li Q, Cao Z, Liu H.

Protein Pept Lett. 2010 Mar;17(3):287-96.

PMID:
19508202
[PubMed - indexed for MEDLINE]
10.

Prediction of helix-helix contacts and interacting helices in polytopic membrane proteins using neural networks.

Fuchs A, Kirschner A, Frishman D.

Proteins. 2009 Mar;74(4):857-71. doi: 10.1002/prot.22194.

PMID:
18704938
[PubMed - indexed for MEDLINE]
11.

Sequence, structure and energetic determinants of phosphopeptide selectivity of SH2 domains.

Sheinerman FB, Al-Lazikani B, Honig B.

J Mol Biol. 2003 Dec 5;334(4):823-41.

PMID:
14636606
[PubMed - indexed for MEDLINE]
12.

Enhanced prediction of conformational flexibility and phosphorylation in proteins.

Swaminathan K, Adamczak R, Porollo A, Meller J.

Adv Exp Med Biol. 2010;680:307-19. doi: 10.1007/978-1-4419-5913-3_35.

PMID:
20865514
[PubMed - indexed for MEDLINE]
13.

Structure-based prediction of DNA target sites by regulatory proteins.

Kono H, Sarai A.

Proteins. 1999 Apr 1;35(1):114-31.

PMID:
10090291
[PubMed - indexed for MEDLINE]
14.

Enhancing the accuracy of chemogenomic models with a three-dimensional binding site kernel.

Meslamani J, Rognan D.

J Chem Inf Model. 2011 Jul 25;51(7):1593-603. doi: 10.1021/ci200166t. Epub 2011 Jun 21.

PMID:
21644501
[PubMed - indexed for MEDLINE]
15.

Assessment of ligand-binding residue predictions in CASP9.

Schmidt T, Haas J, Gallo Cassarino T, Schwede T.

Proteins. 2011;79 Suppl 10:126-36. doi: 10.1002/prot.23174. Epub 2011 Oct 11.

PMID:
21987472
[PubMed - indexed for MEDLINE]
16.

Predicting residue-wise contact orders in proteins by support vector regression.

Song J, Burrage K.

BMC Bioinformatics. 2006 Oct 3;7:425.

PMID:
17014735
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Prediction of protein-RNA binding sites by a random forest method with combined features.

Liu ZP, Wu LY, Wang Y, Zhang XS, Chen L.

Bioinformatics. 2010 Jul 1;26(13):1616-22. doi: 10.1093/bioinformatics/btq253. Epub 2010 May 18.

PMID:
20483814
[PubMed - indexed for MEDLINE]
Free Article
18.

Computational approaches for protein function prediction: a combined strategy from multiple sequence alignment to molecular docking-based virtual screening.

Pierri CL, Parisi G, Porcelli V.

Biochim Biophys Acta. 2010 Sep;1804(9):1695-712. doi: 10.1016/j.bbapap.2010.04.008. Epub 2010 Apr 28. Review.

PMID:
20433957
[PubMed - indexed for MEDLINE]
Free Article
19.

From nonspecific DNA-protein encounter complexes to the prediction of DNA-protein interactions.

Gao M, Skolnick J.

PLoS Comput Biol. 2009 Mar;5(3):e1000341. doi: 10.1371/journal.pcbi.1000341. Epub 2009 Apr 3.

PMID:
19343221
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Classifying RNA-binding proteins based on electrostatic properties.

Shazman S, Mandel-Gutfreund Y.

PLoS Comput Biol. 2008 Aug 8;4(8):e1000146. doi: 10.1371/journal.pcbi.1000146. Erratum in: PLoS Comput Biol. 2008 Aug;4(8). doi: 10.1371/annotation/be4eb7dd-4092-49c1-a619-e8eeba40ed67.

PMID:
18716674
[PubMed - indexed for MEDLINE]
Free PMC Article

Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

Write to the Help Desk