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Results: 1 to 20 of 127

1.

Deleterious amino acid polymorphisms in Arabidopsis thaliana and rice.

Günther T, Schmid KJ.

Theor Appl Genet. 2010 Jun;121(1):157-68. doi: 10.1007/s00122-010-1299-4. Epub 2010 Mar 3.

PMID:
20198468
[PubMed - indexed for MEDLINE]
2.

A bioinformatics approach for the phenotype prediction of nonsynonymous single nucleotide polymorphisms in human cytochromes P450.

Wang LL, Li Y, Zhou SF.

Drug Metab Dispos. 2009 May;37(5):977-91. doi: 10.1124/dmd.108.026047. Epub 2009 Feb 9.

PMID:
19204079
[PubMed - indexed for MEDLINE]
Free Article
3.

Evidence for a large-scale population structure of Arabidopsis thaliana from genome-wide single nucleotide polymorphism markers.

Schmid KJ, Törjék O, Meyer R, Schmuths H, Hoffmann MH, Altmann T.

Theor Appl Genet. 2006 Apr;112(6):1104-14. Epub 2006 Feb 2.

PMID:
16453134
[PubMed - indexed for MEDLINE]
4.

Phenotype prediction of nonsynonymous single nucleotide polymorphisms in human phase II drug/xenobiotic metabolizing enzymes: perspectives on molecular evolution.

Hao D, Xiao P, Chen S.

Sci China Life Sci. 2010 Oct;53(10):1252-62. doi: 10.1007/s11427-010-4062-9. Epub 2010 Oct 17.

PMID:
20953949
[PubMed - indexed for MEDLINE]
5.

Predicting the phenotypic effects of non-synonymous single nucleotide polymorphisms based on support vector machines.

Tian J, Wu N, Guo X, Guo J, Zhang J, Fan Y.

BMC Bioinformatics. 2007 Nov 16;8:450.

PMID:
18005451
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Phenotype prediction of non-synonymous single-nucleotide polymorphisms in human ATP-binding cassette transporter genes.

Wang LL, Liu YH, Meng LL, Li CG, Zhou SF.

Basic Clin Pharmacol Toxicol. 2011 Feb;108(2):94-114. doi: 10.1111/j.1742-7843.2010.00627.x. Epub 2010 Sep 6.

PMID:
20849526
[PubMed - indexed for MEDLINE]
7.

Mutational bias affects protein evolution in flowering plants.

Wang HC, Singer GA, Hickey DA.

Mol Biol Evol. 2004 Jan;21(1):90-6. Epub 2003 Oct 31.

PMID:
14595101
[PubMed - indexed for MEDLINE]
Free Article
8.

Computational prediction of the effects of non-synonymous single nucleotide polymorphisms in human DNA repair genes.

Nakken S, Alseth I, Rognes T.

Neuroscience. 2007 Apr 14;145(4):1273-9. Epub 2006 Oct 19. Review.

PMID:
17055652
[PubMed - indexed for MEDLINE]
9.

Inference of the japonica rice domestication process from the distribution of six functional nucleotide polymorphisms of domestication-related genes in various landraces and modern cultivars.

Konishi S, Ebana K, Izawa T.

Plant Cell Physiol. 2008 Sep;49(9):1283-93. doi: 10.1093/pcp/pcn118. Epub 2008 Aug 12.

PMID:
18701522
[PubMed - indexed for MEDLINE]
10.

Genome-wide identification of NBS genes in japonica rice reveals significant expansion of divergent non-TIR NBS-LRR genes.

Zhou T, Wang Y, Chen JQ, Araki H, Jing Z, Jiang K, Shen J, Tian D.

Mol Genet Genomics. 2004 May;271(4):402-15. Epub 2004 Mar 10.

PMID:
15014983
[PubMed - indexed for MEDLINE]
11.

Predicting deleterious nsSNPs: an analysis of sequence and structural attributes.

Dobson RJ, Munroe PB, Caulfield MJ, Saqi MA.

BMC Bioinformatics. 2006 Apr 21;7:217.

PMID:
16630345
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

A draft sequence of the rice genome (Oryza sativa L. ssp. indica).

Yu J, Hu S, Wang J, Wong GK, Li S, Liu B, Deng Y, Dai L, Zhou Y, Zhang X, Cao M, Liu J, Sun J, Tang J, Chen Y, Huang X, Lin W, Ye C, Tong W, Cong L, Geng J, Han Y, Li L, Li W, Hu G, Huang X, Li W, Li J, Liu Z, Li L, Liu J, Qi Q, Liu J, Li L, Li T, Wang X, Lu H, Wu T, Zhu M, Ni P, Han H, Dong W, Ren X, Feng X, Cui P, Li X, Wang H, Xu X, Zhai W, Xu Z, Zhang J, He S, Zhang J, Xu J, Zhang K, Zheng X, Dong J, Zeng W, Tao L, Ye J, Tan J, Ren X, Chen X, He J, Liu D, Tian W, Tian C, Xia H, Bao Q, Li G, Gao H, Cao T, Wang J, Zhao W, Li P, Chen W, Wang X, Zhang Y, Hu J, Wang J, Liu S, Yang J, Zhang G, Xiong Y, Li Z, Mao L, Zhou C, Zhu Z, Chen R, Hao B, Zheng W, Chen S, Guo W, Li G, Liu S, Tao M, Wang J, Zhu L, Yuan L, Yang H.

Science. 2002 Apr 5;296(5565):79-92.

PMID:
11935017
[PubMed - indexed for MEDLINE]
Free Article
13.

Phenotype prediction of deleterious nonsynonymous single nucleotide polymorphisms in human alcohol metabolism-related genes: a bioinformatics study.

Wang LL, Yang AK, Li Y, Liu JP, Zhou SF.

Alcohol. 2010 Aug;44(5):425-38. doi: 10.1016/j.alcohol.2010.05.009. Epub 2010 Jun 18.

PMID:
20804942
[PubMed - indexed for MEDLINE]
14.

Identification of candidate genes in rice for resistance to sheath blight disease by whole genome sequencing.

Silva J, Scheffler B, Sanabria Y, De Guzman C, Galam D, Farmer A, Woodward J, May G, Oard J.

Theor Appl Genet. 2012 Jan;124(1):63-74. doi: 10.1007/s00122-011-1687-4. Epub 2011 Sep 7.

PMID:
21901547
[PubMed - indexed for MEDLINE]
15.

Prediction of the phenotypic effects of non-synonymous single nucleotide polymorphisms using structural and evolutionary information.

Bao L, Cui Y.

Bioinformatics. 2005 May 15;21(10):2185-90. Epub 2005 Mar 3.

PMID:
15746281
[PubMed - indexed for MEDLINE]
Free Article
16.

Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes.

Xu X, Liu X, Ge S, Jensen JD, Hu F, Li X, Dong Y, Gutenkunst RN, Fang L, Huang L, Li J, He W, Zhang G, Zheng X, Zhang F, Li Y, Yu C, Kristiansen K, Zhang X, Wang J, Wright M, McCouch S, Nielsen R, Wang J, Wang W.

Nat Biotechnol. 2011 Dec 11;30(1):105-11. doi: 10.1038/nbt.2050.

PMID:
22158310
[PubMed - indexed for MEDLINE]
17.

Common sequence polymorphisms shaping genetic diversity in Arabidopsis thaliana.

Clark RM, Schweikert G, Toomajian C, Ossowski S, Zeller G, Shinn P, Warthmann N, Hu TT, Fu G, Hinds DA, Chen H, Frazer KA, Huson DH, Schölkopf B, Nordborg M, Rätsch G, Ecker JR, Weigel D.

Science. 2007 Jul 20;317(5836):338-42.

PMID:
17641193
[PubMed - indexed for MEDLINE]
Free Article
18.

Proteome-wide survey of phosphorylation patterns affected by nuclear DNA polymorphisms in Arabidopsis thaliana.

Riaño-Pachón DM, Kleessen S, Neigenfind J, Durek P, Weber E, Engelsberger WR, Walther D, Selbig J, Schulze WX, Kersten B.

BMC Genomics. 2010 Jul 1;11:411. doi: 10.1186/1471-2164-11-411.

PMID:
20594336
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Prediction of deleterious non-synonymous single nucleotide polymorphisms of genes related to ethanol-induced toxicity.

Wang LL, Li Y, Zhou SF.

Toxicol Lett. 2009 Jun 1;187(2):99-114. doi: 10.1016/j.toxlet.2009.02.007. Epub 2009 Feb 20.

PMID:
19429251
[PubMed - indexed for MEDLINE]
20.

Non-neutral nonsynonymous single nucleotide polymorphisms in human ABC transporters: the first comparison of six prediction methods.

Hao da C, Feng Y, Xiao R, Xiao PG.

Pharmacol Rep. 2011;63(4):924-34.

PMID:
22001980
[PubMed - indexed for MEDLINE]
Free Article

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