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Results: 1 to 20 of 91

1.

Rooting the ribosomal tree of life.

Fournier GP, Gogarten JP.

Mol Biol Evol. 2010 Aug;27(8):1792-801. doi: 10.1093/molbev/msq057. Epub 2010 Mar 1.

PMID:
20194428
[PubMed - indexed for MEDLINE]
Free Article
2.

Inferring the ancient history of the translation machinery and genetic code via recapitulation of ribosomal subunit assembly orders.

Fournier GP, Neumann JE, Gogarten JP.

PLoS One. 2010 Mar 1;5(3):e9437. doi: 10.1371/journal.pone.0009437.

PMID:
20208990
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

The effects of model choice and mitigating bias on the ribosomal tree of life.

Lasek-Nesselquist E, Gogarten JP.

Mol Phylogenet Evol. 2013 Oct;69(1):17-38. doi: 10.1016/j.ympev.2013.05.006. Epub 2013 May 22.

PMID:
23707703
[PubMed - indexed for MEDLINE]
4.

Horizontal gene transfer of zinc and non-zinc forms of bacterial ribosomal protein S4.

Chen K, Roberts E, Luthey-Schulten Z.

BMC Evol Biol. 2009 Jul 29;9:179. doi: 10.1186/1471-2148-9-179.

PMID:
19640295
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Ancient phylogenetic relationships.

Gribaldo S, Philippe H.

Theor Popul Biol. 2002 Jun;61(4):391-408. Review.

PMID:
12167360
[PubMed - indexed for MEDLINE]
6.

Molecular evolution before the origin of species.

Davis BK.

Prog Biophys Mol Biol. 2002 May-Jul;79(1-3):77-133. Review.

PMID:
12225777
[PubMed - indexed for MEDLINE]
7.

The rooting of the universal tree of life is not reliable.

Philippe H, Forterre P.

J Mol Evol. 1999 Oct;49(4):509-23.

PMID:
10486008
[PubMed - indexed for MEDLINE]
8.

The rhomboids: a nearly ubiquitous family of intramembrane serine proteases that probably evolved by multiple ancient horizontal gene transfers.

Koonin EV, Makarova KS, Rogozin IB, Davidovic L, Letellier MC, Pellegrini L.

Genome Biol. 2003;4(3):R19. Epub 2003 Feb 28.

PMID:
12620104
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

The root of the tree of life in the light of the covarion model.

Lopez P, Forterre P, Philippe H.

J Mol Evol. 1999 Oct;49(4):496-508.

PMID:
10486007
[PubMed - indexed for MEDLINE]
10.
11.

Phylogenetic depth of the bacterial genera Aquifex and Thermotoga inferred from analysis of ribosomal protein, elongation factor, and RNA polymerase subunit sequences.

Bocchetta M, Gribaldo S, Sanangelantoni A, Cammarano P.

J Mol Evol. 2000 Apr;50(4):366-80.

PMID:
10795828
[PubMed - indexed for MEDLINE]
12.

Evolution of the Archaea: emerging views on origins and phylogeny.

Fournier GP, Dick AA, Williams D, Gogarten JP.

Res Microbiol. 2011 Jan;162(1):92-8. doi: 10.1016/j.resmic.2010.09.016. Epub 2010 Oct 27.

PMID:
21034818
[PubMed - indexed for MEDLINE]
13.

Inferring phylogeny from whole genomes.

Górecki P, Tiuryn J.

Bioinformatics. 2007 Jan 15;23(2):e116-22.

PMID:
17237078
[PubMed - indexed for MEDLINE]
Free Article
14.

Ancient gene duplications and the root(s) of the tree of life.

Zhaxybayeva O, Lapierre P, Gogarten JP.

Protoplasma. 2005 Dec;227(1):53-64. Epub 2005 Dec 30.

PMID:
16389494
[PubMed - indexed for MEDLINE]
15.

Simultaneous horizontal gene transfer of a gene coding for ribosomal protein l27 and operational genes in Arthrobacter sp.

Garcia-Vallvé S, Simó FX, Montero MA, Arola L, Romeu A.

J Mol Evol. 2002 Dec;55(6):632-7.

PMID:
12486522
[PubMed - indexed for MEDLINE]
16.

Ribosomal proteins: toward a next generation standard for prokaryotic systematics?

Ramulu HG, Groussin M, Talla E, Planel R, Daubin V, Brochier-Armanet C.

Mol Phylogenet Evol. 2014 Jun;75:103-17. doi: 10.1016/j.ympev.2014.02.013. Epub 2014 Feb 28.

PMID:
24583288
[PubMed - indexed for MEDLINE]
17.

Towards integration of multiple alignment and phylogenetic tree construction.

Vingron M, von Haeseler A.

J Comput Biol. 1997 Spring;4(1):23-34.

PMID:
9109035
[PubMed - indexed for MEDLINE]
18.

Signature of a primitive genetic code in ancient protein lineages.

Fournier GP, Gogarten JP.

J Mol Evol. 2007 Oct;65(4):425-36. Epub 2007 Oct 6.

PMID:
17922074
[PubMed - indexed for MEDLINE]
20.

Genome phylogenies indicate a meaningful alpha-proteobacterial phylogeny and support a grouping of the mitochondria with the Rickettsiales.

Fitzpatrick DA, Creevey CJ, McInerney JO.

Mol Biol Evol. 2006 Jan;23(1):74-85. Epub 2005 Sep 8.

PMID:
16151187
[PubMed - indexed for MEDLINE]
Free Article

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