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Similar articles for PubMed (Select 20179767)

1.

Whole methylome analysis by ultra-deep sequencing using two-base encoding.

Bormann Chung CA, Boyd VL, McKernan KJ, Fu Y, Monighetti C, Peckham HE, Barker M.

PLoS One. 2010 Feb 22;5(2):e9320. doi: 10.1371/journal.pone.0009320.

3.

Investigation of genomic methylation status using methylation-specific and bisulfite sequencing polymerase chain reaction.

Carless M.

Methods Mol Biol. 2009;523:217-34. doi: 10.1007/978-1-59745-190-1_15.

PMID:
19381936
4.

MethyQA: a pipeline for bisulfite-treated methylation sequencing quality assessment.

Sun S, Noviski A, Yu X.

BMC Bioinformatics. 2013 Aug 23;14:259. doi: 10.1186/1471-2105-14-259.

5.

Analyzing the cancer methylome through targeted bisulfite sequencing.

Lee EJ, Luo J, Wilson JM, Shi H.

Cancer Lett. 2013 Nov 1;340(2):171-8. doi: 10.1016/j.canlet.2012.10.040. Epub 2012 Nov 28. Review.

6.

Formamide as a denaturant for bisulfite conversion of genomic DNA: Bisulfite sequencing of the GSTPi and RARbeta2 genes of 43 formalin-fixed paraffin-embedded prostate cancer specimens.

Zon G, Barker MA, Kaur P, Groshen S, Jones LW, Imam SA, Boyd VL.

Anal Biochem. 2009 Sep 15;392(2):117-25. doi: 10.1016/j.ab.2009.06.001. Epub 2009 Jun 6.

PMID:
19505431
7.

Technical considerations for reduced representation bisulfite sequencing with multiplexed libraries.

Chatterjee A, Rodger EJ, Stockwell PA, Weeks RJ, Morison IM.

J Biomed Biotechnol. 2012;2012:741542. doi: 10.1155/2012/741542. Epub 2012 Oct 10.

8.

Advanced methylome analysis after bisulfite deep sequencing: an example in Arabidopsis.

Dinh HQ, Dubin M, Sedlazeck FJ, Lettner N, Mittelsten Scheid O, von Haeseler A.

PLoS One. 2012;7(7):e41528. doi: 10.1371/journal.pone.0041528. Epub 2012 Jul 20.

9.

DNA methylation analysis by bisulfite conversion, cloning, and sequencing of individual clones.

Zhang Y, Rohde C, Tierling S, Stamerjohanns H, Reinhardt R, Walter J, Jeltsch A.

Methods Mol Biol. 2009;507:177-87. doi: 10.1007/978-1-59745-522-0_14.

PMID:
18987815
10.

Ultra-low-input, tagmentation-based whole-genome bisulfite sequencing.

Adey A, Shendure J.

Genome Res. 2012 Jun;22(6):1139-43. doi: 10.1101/gr.136242.111. Epub 2012 Mar 30.

11.

BSMAP: whole genome bisulfite sequence MAPping program.

Xi Y, Li W.

BMC Bioinformatics. 2009 Jul 27;10:232. doi: 10.1186/1471-2105-10-232.

13.

Bisulfite Patch PCR enables multiplexed sequencing of promoter methylation across cancer samples.

Varley KE, Mitra RD.

Genome Res. 2010 Sep;20(9):1279-87. doi: 10.1101/gr.101212.109. Epub 2010 Jul 13.

14.

Bisulfite genomic sequencing of DNA from dried blood spot microvolume samples.

Xu H, Zhao Y, Liu Z, Zhu W, Zhou Y, Zhao Z.

Forensic Sci Int Genet. 2012 May;6(3):306-9. doi: 10.1016/j.fsigen.2011.06.007. Epub 2011 Jul 6.

PMID:
21737370
15.

Methylation-dependent fragment separation: direct detection of DNA methylation by capillary electrophoresis of PCR products from bisulfite-converted genomic DNA.

Boyd VL, Moody KI, Karger AE, Livak KJ, Zon G, Burns JW.

Anal Biochem. 2006 Jul 15;354(2):266-73. Epub 2006 May 6.

PMID:
16725101
16.
17.

Quantitative DNA methylation analysis based on four-dye trace data from direct sequencing of PCR amplificates.

Lewin J, Schmitt AO, Adorj√°n P, Hildmann T, Piepenbrock C.

Bioinformatics. 2004 Nov 22;20(17):3005-12. Epub 2004 Jul 9.

18.

DNA methylation mapping by tag-modified bisulfite genomic sequencing.

Han W, Cauchi S, Herman JG, Spivack SD.

Anal Biochem. 2006 Aug 1;355(1):50-61. Epub 2006 Jun 2.

PMID:
16797472
19.

High-throughput bisulfite sequencing in mammalian genomes.

Smith ZD, Gu H, Bock C, Gnirke A, Meissner A.

Methods. 2009 Jul;48(3):226-32. doi: 10.1016/j.ymeth.2009.05.003. Epub 2009 May 12.

20.
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