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Results: 1 to 20 of 127

1.

Digital transcriptome profiling from attomole-level RNA samples.

Ozsolak F, Goren A, Gymrek M, Guttman M, Regev A, Bernstein BE, Milos PM.

Genome Res. 2010 Apr;20(4):519-25. doi: 10.1101/gr.102129.109. Epub 2010 Feb 4.

PMID:
20133332
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Quantification of the yeast transcriptome by single-molecule sequencing.

Lipson D, Raz T, Kieu A, Jones DR, Giladi E, Thayer E, Thompson JF, Letovsky S, Milos P, Causey M.

Nat Biotechnol. 2009 Jul;27(7):652-8. doi: 10.1038/nbt.1551. Epub 2009 Jul 5.

PMID:
19581875
[PubMed - indexed for MEDLINE]
3.

Direct RNA sequencing.

Ozsolak F, Platt AR, Jones DR, Reifenberger JG, Sass LE, McInerney P, Thompson JF, Bowers J, Jarosz M, Milos PM.

Nature. 2009 Oct 8;461(7265):814-8. doi: 10.1038/nature08390. Epub 2009 Sep 23.

PMID:
19776739
[PubMed - indexed for MEDLINE]
4.

Novel isothermal, linear nucleic acid amplification systems for highly multiplexed applications.

Kurn N, Chen P, Heath JD, Kopf-Sill A, Stephens KM, Wang S.

Clin Chem. 2005 Oct;51(10):1973-81. Epub 2005 Aug 25.

PMID:
16123149
[PubMed - indexed for MEDLINE]
Free Article
5.

Stem cell transcriptome profiling via massive-scale mRNA sequencing.

Cloonan N, Forrest AR, Kolle G, Gardiner BB, Faulkner GJ, Brown MK, Taylor DF, Steptoe AL, Wani S, Bethel G, Robertson AJ, Perkins AC, Bruce SJ, Lee CC, Ranade SS, Peckham HE, Manning JM, McKernan KJ, Grimmond SM.

Nat Methods. 2008 Jul;5(7):613-9. doi: 10.1038/nmeth.1223. Epub 2008 May 30.

PMID:
18516046
[PubMed - indexed for MEDLINE]
6.

Transcriptome profiling using single-molecule direct RNA sequencing.

Ozsolak F, Milos PM.

Methods Mol Biol. 2011;733:51-61. doi: 10.1007/978-1-61779-089-8_4.

PMID:
21431762
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Amplification-free digital gene expression profiling from minute cell quantities.

Ozsolak F, Ting DT, Wittner BS, Brannigan BW, Paul S, Bardeesy N, Ramaswamy S, Milos PM, Haber DA.

Nat Methods. 2010 Aug;7(8):619-21. doi: 10.1038/nmeth.1480. Epub 2010 Jul 18.

PMID:
20639869
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

RNA sequencing and quantitation using the Helicos Genetic Analysis System.

Raz T, Causey M, Jones DR, Kieu A, Letovsky S, Lipson D, Thayer E, Thompson JF, Milos PM.

Methods Mol Biol. 2011;733:37-49. doi: 10.1007/978-1-61779-089-8_3.

PMID:
21431761
[PubMed - indexed for MEDLINE]
9.

More than 40,000 transcripts, including novel and noncoding transcripts, in mouse embryonic stem cells.

Araki R, Fukumura R, Sasaki N, Kasama Y, Suzuki N, Takahashi H, Tabata Y, Saito T, Abe M.

Stem Cells. 2006 Nov;24(11):2522-8. Epub 2006 Jul 6.

PMID:
16825609
[PubMed - indexed for MEDLINE]
Free Article
10.

Whole-transcriptome RNAseq analysis from minute amount of total RNA.

Tariq MA, Kim HJ, Jejelowo O, Pourmand N.

Nucleic Acids Res. 2011 Oct;39(18):e120. doi: 10.1093/nar/gkr547. Epub 2011 Jul 6.

PMID:
21737426
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Microfluidic single-cell whole-transcriptome sequencing.

Streets AM, Zhang X, Cao C, Pang Y, Wu X, Xiong L, Yang L, Fu Y, Zhao L, Tang F, Huang Y.

Proc Natl Acad Sci U S A. 2014 May 13;111(19):7048-53. doi: 10.1073/pnas.1402030111. Epub 2014 Apr 29.

PMID:
24782542
[PubMed - indexed for MEDLINE]
12.

A strand-specific library preparation protocol for RNA sequencing.

Borodina T, Adjaye J, Sultan M.

Methods Enzymol. 2011;500:79-98. doi: 10.1016/B978-0-12-385118-5.00005-0.

PMID:
21943893
[PubMed - indexed for MEDLINE]
13.

Limitations of mRNA amplification from small-size cell samples.

Nygaard V, Holden M, Løland A, Langaas M, Myklebost O, Hovig E.

BMC Genomics. 2005 Oct 27;6:147.

PMID:
16253144
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution.

Wilhelm BT, Marguerat S, Watt S, Schubert F, Wood V, Goodhead I, Penkett CJ, Rogers J, Bähler J.

Nature. 2008 Jun 26;453(7199):1239-43. doi: 10.1038/nature07002. Epub 2008 May 18.

PMID:
18488015
[PubMed - indexed for MEDLINE]
15.

T7-based linear amplification of low concentration mRNA samples using beads and microfluidics for global gene expression measurements.

Kralj JG, Player A, Sedrick H, Munson MS, Petersen D, Forry SP, Meltzer P, Kawasaki E, Locascio LE.

Lab Chip. 2009 Apr 7;9(7):917-24. doi: 10.1039/b811714d. Epub 2008 Dec 15.

PMID:
19294302
[PubMed - indexed for MEDLINE]
16.

Highly multiplexed subcellular RNA sequencing in situ.

Lee JH, Daugharthy ER, Scheiman J, Kalhor R, Yang JL, Ferrante TC, Terry R, Jeanty SS, Li C, Amamoto R, Peters DT, Turczyk BM, Marblestone AH, Inverso SA, Bernard A, Mali P, Rios X, Aach J, Church GM.

Science. 2014 Mar 21;343(6177):1360-3. doi: 10.1126/science.1250212. Epub 2014 Feb 27.

PMID:
24578530
[PubMed - indexed for MEDLINE]
17.

Transcriptome analysis by strand-specific sequencing of complementary DNA.

Parkhomchuk D, Borodina T, Amstislavskiy V, Banaru M, Hallen L, Krobitsch S, Lehrach H, Soldatov A.

Nucleic Acids Res. 2009 Oct;37(18):e123. doi: 10.1093/nar/gkp596. Epub 2009 Jul 20.

PMID:
19620212
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Validation and application of a high fidelity mRNA linear amplification procedure for profiling gene expression.

Patel OV, Suchyta SP, Sipkovsky SS, Yao J, Ireland JJ, Coussens PM, Smith GW.

Vet Immunol Immunopathol. 2005 May 15;105(3-4):331-42.

PMID:
15808310
[PubMed - indexed for MEDLINE]
19.

Evaluation of techniques using amplified nucleic acid probes for gene expression profiling.

Saghizadeh M, Brown DJ, Tajbakhsh J, Chen Z, Kenney MC, Farber DB, Nelson SF.

Biomol Eng. 2003 Mar;20(3):97-106.

PMID:
12684071
[PubMed - indexed for MEDLINE]
20.

Do-it-yourself: construction of a custom cDNA macroarray platform with high sensitivity and linear range.

Boonefaes T, Houthuys E, Van den Bergh R, Vander Beken S, Raes G, Brouckaert P, De Baetselier P, Grooten J.

BMC Biotechnol. 2011 Oct 25;11:97. doi: 10.1186/1472-6750-11-97.

PMID:
22026914
[PubMed - indexed for MEDLINE]
Free PMC Article

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