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Results: 1 to 20 of 86

1.

Assembling genomes using short-read sequencing technology.

Jackman SD, Birol I.

Genome Biol. 2010 Jan 28;11(1):202. doi: 10.1186/gb-2010-11-1-202. Review.

PMID:
20128932
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

ABySS: a parallel assembler for short read sequence data.

Simpson JT, Wong K, Jackman SD, Schein JE, Jones SJ, Birol I.

Genome Res. 2009 Jun;19(6):1117-23. doi: 10.1101/gr.089532.108. Epub 2009 Feb 27.

PMID:
19251739
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Enrichment of gene-coding sequences in maize by genome filtration.

Whitelaw CA, Barbazuk WB, Pertea G, Chan AP, Cheung F, Lee Y, Zheng L, van Heeringen S, Karamycheva S, Bennetzen JL, SanMiguel P, Lakey N, Bedell J, Yuan Y, Budiman MA, Resnick A, Van Aken S, Utterback T, Riedmuller S, Williams M, Feldblyum T, Schubert K, Beachy R, Fraser CM, Quackenbush J.

Science. 2003 Dec 19;302(5653):2118-20.

PMID:
14684821
[PubMed - indexed for MEDLINE]
Free Article
4.

A Sanger/pyrosequencing hybrid approach for the generation of high-quality draft assemblies of marine microbial genomes.

Goldberg SM, Johnson J, Busam D, Feldblyum T, Ferriera S, Friedman R, Halpern A, Khouri H, Kravitz SA, Lauro FM, Li K, Rogers YH, Strausberg R, Sutton G, Tallon L, Thomas T, Venter E, Frazier M, Venter JC.

Proc Natl Acad Sci U S A. 2006 Jul 25;103(30):11240-5. Epub 2006 Jul 13. Erratum in: Proc Natl Acad Sci U S A. 2006 Oct 24;103(43):16057.

PMID:
16840556
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

The maize genome as a model for efficient sequence analysis of large plant genomes.

Rabinowicz PD, Bennetzen JL.

Curr Opin Plant Biol. 2006 Apr;9(2):149-56. Epub 2006 Feb 3. Review.

PMID:
16459129
[PubMed - indexed for MEDLINE]
6.

Maize genome sequencing by methylation filtration.

Palmer LE, Rabinowicz PD, O'Shaughnessy AL, Balija VS, Nascimento LU, Dike S, de la Bastide M, Martienssen RA, McCombie WR.

Science. 2003 Dec 19;302(5653):2115-7.

PMID:
14684820
[PubMed - indexed for MEDLINE]
Free Article
7.

Maize DNA-sequencing strategies and genome organization.

Okagaki RJ, Phillips RL.

Genome Biol. 2004;5(5):223. Epub 2004 Apr 16. Review.

PMID:
15128439
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Methylation-sensitive linking libraries enhance gene-enriched sequencing of complex genomes and map DNA methylation domains.

Nelson W, Luo M, Ma J, Estep M, Estill J, He R, Talag J, Sisneros N, Kudrna D, Kim H, Ammiraju JS, Collura K, Bharti AK, Messing J, Wing RA, SanMiguel P, Bennetzen JL, Soderlund C.

BMC Genomics. 2008 Dec 19;9:621. doi: 10.1186/1471-2164-9-621.

PMID:
19099592
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

The Maize Genome Sequencing Project.

Chandler VL, Brendel V.

Plant Physiol. 2002 Dec;130(4):1594-7. Review. No abstract available.

PMID:
12481042
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

High quality draft sequences for prokaryotic genomes using a mix of new sequencing technologies.

Aury JM, Cruaud C, Barbe V, Rogier O, Mangenot S, Samson G, Poulain J, Anthouard V, Scarpelli C, Artiguenave F, Wincker P.

BMC Genomics. 2008 Dec 16;9:603. doi: 10.1186/1471-2164-9-603.

PMID:
19087275
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

A biologist's guide to de novo genome assembly using next-generation sequence data: A test with fungal genomes.

Haridas S, Breuill C, Bohlmann J, Hsiang T.

J Microbiol Methods. 2011 Sep;86(3):368-75. doi: 10.1016/j.mimet.2011.06.019. Epub 2011 Jul 3.

PMID:
21749903
[PubMed - indexed for MEDLINE]
12.

Arabidopsis genome analysis as exemplified by analysis of chromosome 4.

Mayer KF, Lemcke K, Schüller CM, Rudd S, Zaccaria P.

Brief Bioinform. 2000 Nov;1(4):389-97. Review.

PMID:
11465056
[PubMed - indexed for MEDLINE]
Free Article
13.

De novo sequencing of plant genomes using second-generation technologies.

Imelfort M, Edwards D.

Brief Bioinform. 2009 Nov;10(6):609-18. doi: 10.1093/bib/bbp039. Review.

PMID:
19933209
[PubMed - indexed for MEDLINE]
Free Article
14.

SNP discovery by transcriptome pyrosequencing.

Barbazuk WB, Schnable PS.

Methods Mol Biol. 2011;729:225-46. doi: 10.1007/978-1-61779-065-2_15.

PMID:
21365494
[PubMed - indexed for MEDLINE]
15.

Feasibility of physical map construction from fingerprinted bacterial artificial chromosome libraries of polyploid plant species.

Luo MC, Ma Y, You FM, Anderson OD, Kopecký D, Simková H, Safár J, Dolezel J, Gill B, McGuire PE, Dvorak J.

BMC Genomics. 2010 Feb 19;11:122. doi: 10.1186/1471-2164-11-122.

PMID:
20170511
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Sequence interpretation. Making sense of the sequence.

Galas DJ.

Science. 2001 Feb 16;291(5507):1257-60. No abstract available.

PMID:
11233451
[PubMed - indexed for MEDLINE]
17.

A general coverage theory for shotgun DNA sequencing.

Wendl MC.

J Comput Biol. 2006 Jul-Aug;13(6):1177-96.

PMID:
16901236
[PubMed - indexed for MEDLINE]
18.

A post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs.

Swain MT, Tsai IJ, Assefa SA, Newbold C, Berriman M, Otto TD.

Nat Protoc. 2012 Jun 7;7(7):1260-84. doi: 10.1038/nprot.2012.068.

PMID:
22678431
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Rising in the East.

Petsko GA.

Genome Biol. 2010 Jan 29;11(1):102. doi: 10.1186/gb-2010-11-1-102. No abstract available.

PMID:
20156314
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Whole genome sequencing.

Ng PC, Kirkness EF.

Methods Mol Biol. 2010;628:215-26. doi: 10.1007/978-1-60327-367-1_12. Review.

PMID:
20238084
[PubMed - indexed for MEDLINE]

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