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Items: 1 to 20 of 77

1.

An integrated mass-spectrometry pipeline identifies novel protein coding-regions in the human genome.

Bitton DA, Smith DL, Connolly Y, Scutt PJ, Miller CJ.

PLoS One. 2010 Jan 28;5(1):e8949. doi: 10.1371/journal.pone.0008949.

2.

Interrogating the human genome using uninterpreted mass spectrometry data.

Choudhary JS, Blackstock WP, Creasy DM, Cottrell JS.

Proteomics. 2001 May;1(5):651-67. Erratum in: Proteomics 2001 Jun;1(6):796.

PMID:
11678035
3.

Genome annotation of Anopheles gambiae using mass spectrometry-derived data.

Kalume DE, Peri S, Reddy R, Zhong J, Okulate M, Kumar N, Pandey A.

BMC Genomics. 2005 Sep 19;6:128.

5.

Identification of proteins from non-model organisms using mass spectrometry: application to a hibernating mammal.

Russeth KP, Higgins L, Andrews MT.

J Proteome Res. 2006 Apr;5(4):829-39.

PMID:
16602690
6.

Comprehensive mass spectrometric analysis of the 20S proteasome complex.

Huang L, Burlingame AL.

Methods Enzymol. 2005;405:187-236. Review.

PMID:
16413316
7.

Rapid identification of comigrating gel-isolated proteins by ion trap-mass spectrometry.

Arnott D, Henzel WJ, Stults JT.

Electrophoresis. 1998 May;19(6):968-80.

PMID:
9638943
8.

Automated identification of amino acid sequence variations in proteins by HPLC/microspray tandem mass spectrometry.

Gatlin CL, Eng JK, Cross ST, Detter JC, Yates JR 3rd.

Anal Chem. 2000 Feb 15;72(4):757-63.

PMID:
10701260
9.

Virtual polymorphism: finding divergent peptide matches in mass spectrometry data.

Starkweather R, Barnes CS, Wyckoff GJ, Keightley JA.

Anal Chem. 2007 Jul 1;79(13):5030-9. Epub 2007 May 24.

PMID:
17521167
10.

Peptide sequencing by mass spectrometry for homology searches and cloning of genes.

Shevchenko A, Wilm M, Mann M.

J Protein Chem. 1997 Jul;16(5):481-90.

PMID:
9246632
11.

PepLine: a software pipeline for high-throughput direct mapping of tandem mass spectrometry data on genomic sequences.

Ferro M, Tardif M, Reguer E, Cahuzac R, Bruley C, Vermat T, Nugues E, Vigouroux M, Vandenbrouck Y, Garin J, Viari A.

J Proteome Res. 2008 May;7(5):1873-83. doi: 10.1021/pr070415k. Epub 2008 Mar 19.

PMID:
18348511
12.

Mass spectrometry allows direct identification of proteins in large genomes.

Küster B, Mortensen P, Andersen JS, Mann M.

Proteomics. 2001 May;1(5):641-50.

PMID:
11678034
13.

Searching for hypothetical proteins: theory and practice based upon original data and literature.

Lubec G, Afjehi-Sadat L, Yang JW, John JP.

Prog Neurobiol. 2005 Sep-Oct;77(1-2):90-127. Epub 2005 Nov 4. Review.

PMID:
16271823
14.

Fugu and human sequence comparison identifies novel human genes and conserved non-coding sequences.

Gilligan P, Brenner S, Venkatesh B.

Gene. 2002 Jul 10;294(1-2):35-44.

PMID:
12234665
15.
16.

Phosphoproteomics by mass spectrometry and classical protein chemistry approaches.

Salih E.

Mass Spectrom Rev. 2005 Nov-Dec;24(6):828-46. Review.

PMID:
15538747
17.

Peptide sequence tags for fast database search in mass-spectrometry.

Frank A, Tanner S, Bafna V, Pevzner P.

J Proteome Res. 2005 Jul-Aug;4(4):1287-95.

PMID:
16083278
18.

Two-dimensional electrophoretic analysis of proteins expressed by normal and cancerous human crypts: application of mass spectrometry to peptide-mass fingerprinting.

Ji H, Whitehead RH, Reid GE, Moritz RL, Ward LD, Simpson RJ.

Electrophoresis. 1994 Mar-Apr;15(3-4):391-405.

PMID:
8055868
19.

Study of Burkitt lymphoma cell line proteins by high resolution two-dimensional gel electrophoresis and nanoelectrospray mass spectrometry.

Müller EC, Schümann M, Rickers A, Bommert K, Wittmann-Liebold B, Otto A.

Electrophoresis. 1999 Feb;20(2):320-30.

PMID:
10197439
20.

Rapid mass spectrometric peptide sequencing and mass matching for characterization of human melanoma proteins isolated by two-dimensional PAGE.

Clauser KR, Hall SC, Smith DM, Webb JW, Andrews LE, Tran HM, Epstein LB, Burlingame AL.

Proc Natl Acad Sci U S A. 1995 May 23;92(11):5072-6.

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