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Results: 1 to 20 of 102

Similar articles for PubMed (Select 20122273)

1.

In silico feasibility of novel biodegradation pathways for 1,2,4-trichlorobenzene.

Finley SD, Broadbelt LJ, Hatzimanikatis V.

BMC Syst Biol. 2010 Feb 2;4:7. doi: 10.1186/1752-0509-4-7.

2.

Computational framework for predictive biodegradation.

Finley SD, Broadbelt LJ, Hatzimanikatis V.

Biotechnol Bioeng. 2009 Dec 15;104(6):1086-97. doi: 10.1002/bit.22489.

3.

Thermodynamic analysis of biodegradation pathways.

Finley SD, Broadbelt LJ, Hatzimanikatis V.

Biotechnol Bioeng. 2009 Jun 15;103(3):532-41. doi: 10.1002/bit.22285.

4.

Yield prediction and stoichiometry of multi-step biodegradation reactions involving oxygenation.

Yuan Z, VanBriesen JM.

Biotechnol Bioeng. 2002 Oct 5;80(1):100-13.

PMID:
12209791
5.

Exploring the diversity of complex metabolic networks.

Hatzimanikatis V, Li C, Ionita JA, Henry CS, Jankowski MD, Broadbelt LJ.

Bioinformatics. 2005 Apr 15;21(8):1603-9. Epub 2004 Dec 21.

6.

The logicome of environmental bacteria: merging catabolic and regulatory events with Boolean formalisms.

Silva-Rocha R, Tamames J, dos Santos VM, de Lorenzo V.

Environ Microbiol. 2011 Sep;13(9):2389-402. doi: 10.1111/j.1462-2920.2011.02455.x. Epub 2011 Mar 16. Review.

PMID:
21410625
7.

Complementary identification of multiple flux distributions and multiple metabolic pathways.

Lee DY, Fan LT, Park S, Lee SY, Shafie S, Bertók B, Friedler F.

Metab Eng. 2005 May;7(3):182-200.

PMID:
15885617
8.

A Pseudomonas putida strain genetically engineered for 1,2,3-trichloropropane bioremediation.

Samin G, Pavlova M, Arif MI, Postema CP, Damborsky J, Janssen DB.

Appl Environ Microbiol. 2014 Sep;80(17):5467-76. doi: 10.1128/AEM.01620-14. Epub 2014 Jun 27.

9.

Dechlorination of 1,2,3- and 1,2,4-trichlorobenzene by the white-rot fungus Trametes versicolor.

Marco-Urrea E, Pérez-Trujillo M, Caminal G, Vicent T.

J Hazard Mater. 2009 Jul 30;166(2-3):1141-7. doi: 10.1016/j.jhazmat.2008.12.076. Epub 2008 Dec 25.

PMID:
19179004
10.

Evaluating the biodegradation of aromatic hydrocarbons by monitoring of several functional genes.

Piskonen R, Nyyssönen M, Itävaara M.

Biodegradation. 2008 Nov;19(6):883-95. doi: 10.1007/s10532-008-9190-6. Epub 2008 Apr 20.

PMID:
18425625
11.

A computational approach to design and evaluate enzymatic reaction pathways: application to 1-butanol production from pyruvate.

Wu D, Wang Q, Assary RS, Broadbelt LJ, Krilov G.

J Chem Inf Model. 2011 Jul 25;51(7):1634-47. doi: 10.1021/ci2000659. Epub 2011 Jul 5.

PMID:
21671635
12.

The potential of metabolomics tools in bioremediation studies.

Villas-Bôas SG, Bruheim P.

OMICS. 2007 Fall;11(3):305-13. Review.

PMID:
17883341
13.

OptFlux: an open-source software platform for in silico metabolic engineering.

Rocha I, Maia P, Evangelista P, Vilaça P, Soares S, Pinto JP, Nielsen J, Patil KR, Ferreira EC, Rocha M.

BMC Syst Biol. 2010 Apr 19;4:45. doi: 10.1186/1752-0509-4-45.

14.

Biodegradation kinetics of benzene, toluene, and phenol as single and mixed substrates for Pseudomonas putida F1.

Reardon KF, Mosteller DC, Bull Rogers JD.

Biotechnol Bioeng. 2000 Aug 20;69(4):385-400.

PMID:
10862677
15.

Isolation and characterization of 1,2,4-trichlorobenzene mineralizing Bordetella sp. and its bioremediation potential in soil.

Wang F, Grundmann S, Schmid M, Dörfler U, Roherer S, Charles Munch J, Hartmann A, Jiang X, Schroll R.

Chemosphere. 2007 Mar;67(5):896-902. Epub 2007 Jan 3.

PMID:
17204305
16.

Genome-scale constraint-based modeling of Geobacter metallireducens.

Sun J, Sayyar B, Butler JE, Pharkya P, Fahland TR, Famili I, Schilling CH, Lovley DR, Mahadevan R.

BMC Syst Biol. 2009 Jan 28;3:15. doi: 10.1186/1752-0509-3-15.

17.
18.

Discovery and analysis of novel metabolic pathways for the biosynthesis of industrial chemicals: 3-hydroxypropanoate.

Henry CS, Broadbelt LJ, Hatzimanikatis V.

Biotechnol Bioeng. 2010 Jun 15;106(3):462-73. doi: 10.1002/bit.22673.

PMID:
20091733
19.

Bioremediation process on Brazil shoreline. Laboratory experiments.

Rosa AP, Triguis JA.

Environ Sci Pollut Res Int. 2007 Nov;14(7):470-6.

PMID:
18062478
20.

The private life of environmental bacteria: pollutant biodegradation at the single cell level.

Nikel PI, Silva-Rocha R, Benedetti I, de Lorenzo V.

Environ Microbiol. 2014 Mar;16(3):628-42. doi: 10.1111/1462-2920.12360. Epub 2014 Jan 16. Review.

PMID:
24341371
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