Items per page
Sort by

Send to:

Choose Destination

Links from PubMed

Items: 1 to 20 of 159


A hub-attachment based method to detect functional modules from confidence-scored protein interactions and expression profiles.

Chin CH, Chen SH, Ho CW, Ko MT, Lin CY.

BMC Bioinformatics. 2010 Jan 18;11 Suppl 1:S25. doi: 10.1186/1471-2105-11-S1-S25.


Towards the identification of protein complexes and functional modules by integrating PPI network and gene expression data.

Li M, Wu X, Wang J, Pan Y.

BMC Bioinformatics. 2012 May 23;13:109. doi: 10.1186/1471-2105-13-109.


Spotlight: assembly of protein complexes by integrating graph clustering methods.

Chin CH, Chen SH, Chen CY, Hsiung CA, Ho CW, Ko MT, Lin CY.

Gene. 2013 Apr 10;518(1):42-51. doi: 10.1016/j.gene.2012.11.087. Epub 2012 Dec 26.


Identification of functional hubs and modules by converting interactome networks into hierarchical ordering of proteins.

Cho YR, Zhang A.

BMC Bioinformatics. 2010 Apr 29;11 Suppl 3:S3. doi: 10.1186/1471-2105-11-S3-S3.


MCL-CAw: a refinement of MCL for detecting yeast complexes from weighted PPI networks by incorporating core-attachment structure.

Srihari S, Ning K, Leong HW.

BMC Bioinformatics. 2010 Oct 12;11:504. doi: 10.1186/1471-2105-11-504.


MOfinder: a novel algorithm for detecting overlapping modules from protein-protein interaction network.

Yu Q, Li GH, Huang JF.

J Biomed Biotechnol. 2012;2012:103702. doi: 10.1155/2012/103702. Epub 2012 Feb 8.


Detecting functional modules in the yeast protein-protein interaction network.

Chen J, Yuan B.

Bioinformatics. 2006 Sep 15;22(18):2283-90. Epub 2006 Jul 12.


Growing functional modules from a seed protein via integration of protein interaction and gene expression data.

Maraziotis IA, Dimitrakopoulou K, Bezerianos A.

BMC Bioinformatics. 2007 Oct 23;8:408.


Detection of functional modules from protein interaction networks with an enhanced random walk based algorithm.

Cai B, Wang H, Zheng H, Wang H.

Int J Comput Biol Drug Des. 2011;4(3):290-306. doi: 10.1504/IJCBDD.2011.041416. Epub 2011 Jul 21.


Efficient and accurate Greedy Search Methods for mining functional modules in protein interaction networks.

He J, Li C, Ye B, Zhong W.

BMC Bioinformatics. 2012 Jun 25;13 Suppl 10:S19. doi: 10.1186/1471-2105-13-S10-S19.


Hubba: hub objects analyzer--a framework of interactome hubs identification for network biology.

Lin CY, Chin CH, Wu HH, Chen SH, Ho CW, Ko MT.

Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W438-43. doi: 10.1093/nar/gkn257. Epub 2008 May 24.


Enumeration of condition-dependent dense modules in protein interaction networks.

Georgii E, Dietmann S, Uno T, Pagel P, Tsuda K.

Bioinformatics. 2009 Apr 1;25(7):933-40. doi: 10.1093/bioinformatics/btp080. Epub 2009 Feb 11.


Functional module identification in protein interaction networks by interaction patterns.

Wang Y, Qian X.

Bioinformatics. 2014 Jan 1;30(1):81-93. doi: 10.1093/bioinformatics/btt569. Epub 2013 Oct 1.


Semantic integration to identify overlapping functional modules in protein interaction networks.

Cho YR, Hwang W, Ramanathan M, Zhang A.

BMC Bioinformatics. 2007 Jul 24;8:265.


Identifying functional modules in protein-protein interaction networks: an integrated exact approach.

Dittrich MT, Klau GW, Rosenwald A, Dandekar T, Müller T.

Bioinformatics. 2008 Jul 1;24(13):i223-31. doi: 10.1093/bioinformatics/btn161.


Prior knowledge based mining functional modules from Yeast PPI networks with gene ontology.

Jing L, Ng MK.

BMC Bioinformatics. 2010 Dec 14;11 Suppl 11:S3. doi: 10.1186/1471-2105-11-S11-S3.


A core-attachment based method to detect protein complexes in PPI networks.

Wu M, Li X, Kwoh CK, Ng SK.

BMC Bioinformatics. 2009 Jun 2;10:169. doi: 10.1186/1471-2105-10-169.


A structural approach for finding functional modules from large biological networks.

Mete M, Tang F, Xu X, Yuruk N.

BMC Bioinformatics. 2008 Aug 12;9 Suppl 9:S19. doi: 10.1186/1471-2105-9-S9-S19.


How and when should interactome-derived clusters be used to predict functional modules and protein function?

Song J, Singh M.

Bioinformatics. 2009 Dec 1;25(23):3143-50. doi: 10.1093/bioinformatics/btp551. Epub 2009 Sep 21.


A hybrid graph-theoretic method for mining overlapping functional modules in large sparse protein interaction networks.

Zhang S, Liu HW, Ning XM, Zhang XS.

Int J Data Min Bioinform. 2009;3(1):68-84.

Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

Write to the Help Desk