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Results: 1 to 20 of 138

Similar articles for PubMed (Select 20090784)

1.

Experimental factors affecting PCR-based estimates of microbial species richness and evenness.

Engelbrektson A, Kunin V, Wrighton KC, Zvenigorodsky N, Chen F, Ochman H, Hugenholtz P.

ISME J. 2010 May;4(5):642-7. doi: 10.1038/ismej.2009.153. Epub 2010 Jan 21.

PMID:
20090784
2.

Estimating bacterial diversity for ecological studies: methods, metrics, and assumptions.

Birtel J, Walser JC, Pichon S, Bürgmann H, Matthews B.

PLoS One. 2015 Apr 27;10(4):e0125356. doi: 10.1371/journal.pone.0125356. eCollection 2015.

3.

Quo vadis? Microbial profiling revealed strong effects of cleanroom maintenance and routes of contamination in indoor environments.

Moissl-Eichinger C, Auerbach AK, Probst AJ, Mahnert A, Tom L, Piceno Y, Andersen GL, Venkateswaran K, Rettberg P, Barczyk S, Pukall R, Berg G.

Sci Rep. 2015 Mar 17;5:9156. doi: 10.1038/srep09156.

4.

Microbial community composition and diversity via 16S rRNA gene amplicons: evaluating the illumina platform.

Sinclair L, Osman OA, Bertilsson S, Eiler A.

PLoS One. 2015 Feb 3;10(2):e0116955. doi: 10.1371/journal.pone.0116955. eCollection 2015.

5.

Assessing the accuracy of quantitative molecular microbial profiling.

O'Sullivan DM, Laver T, Temisak S, Redshaw N, Harris KA, Foy CA, Studholme DJ, Huggett JF.

Int J Mol Sci. 2014 Nov 21;15(11):21476-91. doi: 10.3390/ijms151121476.

6.

F-108 polymer and capillary electrophoresis easily resolves complex environmental DNA mixtures and SNPs.

Damaso N, Martin L, Kushwaha P, Mills D.

Electrophoresis. 2014 Nov;35(21-22):3208-11. doi: 10.1002/elps.201400069. Epub 2014 Oct 20.

PMID:
25168595
7.

The Influence of DNA Extraction Procedure and Primer Set on the Bacterial Community Analysis by Pyrosequencing of Barcoded 16S rRNA Gene Amplicons.

Starke IC, Vahjen W, Pieper R, Zentek J.

Mol Biol Int. 2014;2014:548683. doi: 10.1155/2014/548683. Epub 2014 Jul 10.

8.

Evaluating bias of illumina-based bacterial 16S rRNA gene profiles.

Kennedy K, Hall MW, Lynch MD, Moreno-Hagelsieb G, Neufeld JD.

Appl Environ Microbiol. 2014 Sep;80(18):5717-22. doi: 10.1128/AEM.01451-14. Epub 2014 Jul 7.

9.

Up to Species-level Community Analysis of Human Gut Microbiota by 16S rRNA Amplicon Pyrosequencing.

Nakayama J, Jiang J, Watanabe K, Chen K, Ninxin H, Matsuda K, Kurakawa T, Tsuji H, Sonomoto K, Lee YK.

Biosci Microbiota Food Health. 2013;32(2):69-76. doi: 10.12938/bmfh.32.69. Epub 2013 Apr 27.

10.

The bias associated with amplicon sequencing does not affect the quantitative assessment of bacterial community dynamics.

Ibarbalz FM, Pérez MV, Figuerola EL, Erijman L.

PLoS One. 2014 Jun 12;9(6):e99722. doi: 10.1371/journal.pone.0099722. eCollection 2014.

11.

Regional effects on chimera formation in 454 pyrosequenced amplicons from a mock community.

Shin S, Lee TK, Han JM, Park J.

J Microbiol. 2014 Jul;52(7):566-73. doi: 10.1007/s12275-014-3485-6. Epub 2014 May 30.

PMID:
24879347
12.

Influence of DNA extraction on oral microbial profiles obtained via 16S rRNA gene sequencing.

Abusleme L, Hong BY, Dupuy AK, Strausbaugh LD, Diaz PI.

J Oral Microbiol. 2014 Apr 23;6. doi: 10.3402/jom.v6.23990. eCollection 2014.

13.

Analysis, optimization and verification of Illumina-generated 16S rRNA gene amplicon surveys.

Nelson MC, Morrison HG, Benjamino J, Grim SL, Graf J.

PLoS One. 2014 Apr 10;9(4):e94249. doi: 10.1371/journal.pone.0094249. eCollection 2014.

14.

CopyRighter: a rapid tool for improving the accuracy of microbial community profiles through lineage-specific gene copy number correction.

Angly FE, Dennis PG, Skarshewski A, Vanwonterghem I, Hugenholtz P, Tyson GW.

Microbiome. 2014 Apr 7;2:11. doi: 10.1186/2049-2618-2-11. eCollection 2014.

15.

Estimation of viral richness from shotgun metagenomes using a frequency count approach.

Allen HK, Bunge J, Foster JA, Bayles DO, Stanton TB.

Microbiome. 2013 Feb 4;1(1):5. doi: 10.1186/2049-2618-1-5.

16.

A functional evenness index for microbial ecology.

Troussellier M, Legendre P.

Microb Ecol. 1981 Dec;7(4):283-96. doi: 10.1007/BF02341423.

PMID:
24227544
17.

High-resolution microbial community reconstruction by integrating short reads from multiple 16S rRNA regions.

Amir A, Zeisel A, Zuk O, Elgart M, Stern S, Shamir O, Turnbaugh PJ, Soen Y, Shental N.

Nucleic Acids Res. 2013 Dec;41(22):e205. doi: 10.1093/nar/gkt1070. Epub 2013 Nov 7.

18.

Metagenomic 16S rDNA Illumina tags are a powerful alternative to amplicon sequencing to explore diversity and structure of microbial communities.

Logares R, Sunagawa S, Salazar G, Cornejo-Castillo FM, Ferrera I, Sarmento H, Hingamp P, Ogata H, de Vargas C, Lima-Mendez G, Raes J, Poulain J, Jaillon O, Wincker P, Kandels-Lewis S, Karsenti E, Bork P, Acinas SG.

Environ Microbiol. 2014 Sep;16(9):2659-71. doi: 10.1111/1462-2920.12250. Epub 2013 Sep 18.

PMID:
24102695
19.

Simultaneous pyrosequencing of the 16S rRNA, IncP-1 trfA, and merA genes.

Holmsgaard PN, Sørensen SJ, Hansen LH.

J Microbiol Methods. 2013 Nov;95(2):280-4. doi: 10.1016/j.mimet.2013.09.016. Epub 2013 Sep 27.

PMID:
24080123
20.

Comparison of microbial diversity determined with the same variable tag sequence extracted from two different PCR amplicons.

He Y, Zhou BJ, Deng GH, Jiang XT, Zhang H, Zhou HW.

BMC Microbiol. 2013 Sep 14;13:208. doi: 10.1186/1471-2180-13-208.

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