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Results: 1 to 20 of 132

1.

Stationary wavelet packet transform and dependent laplacian bivariate shrinkage estimator for array-CGH data smoothing.

Nguyen N, Huang H, Oraintara S, Vo A.

J Comput Biol. 2010 Feb;17(2):139-52. doi: 10.1089/cmb.2009.0013.

PMID:
20078226
[PubMed - indexed for MEDLINE]
2.

Array CGH data modeling and smoothing in Stationary Wavelet Packet Transform domain.

Huang H, Nguyen N, Oraintara S, Vo A.

BMC Genomics. 2008 Sep 16;9 Suppl 2:S17. doi: 10.1186/1471-2164-9-S2-S17.

PMID:
18831782
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Classification of array CGH data using smoothed logistic regression model.

Huang J, Salim A, Lei K, O'Sullivan K, Pawitan Y.

Stat Med. 2009 Dec 30;28(30):3798-810. doi: 10.1002/sim.3753.

PMID:
19856275
[PubMed - indexed for MEDLINE]
4.

A shifting level model algorithm that identifies aberrations in array-CGH data.

Magi A, Benelli M, Marseglia G, Nannetti G, Scordo MR, Torricelli F.

Biostatistics. 2010 Apr;11(2):265-80. doi: 10.1093/biostatistics/kxp051. Epub 2009 Nov 30.

PMID:
19948744
[PubMed - indexed for MEDLINE]
Free Article
5.

A new classification method using array Comparative Genome Hybridization data, based on the concept of Limited Jumping Emerging Patterns.

Gambin T, Walczak K.

BMC Bioinformatics. 2009 Jan 30;10 Suppl 1:S64. doi: 10.1186/1471-2105-10-S1-S64.

PMID:
19208168
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

A very fast and accurate method for calling aberrations in array-CGH data.

Benelli M, Marseglia G, Nannetti G, Paravidino R, Zara F, Bricarelli FD, Torricelli F, Magi A.

Biostatistics. 2010 Jul;11(3):515-8. doi: 10.1093/biostatistics/kxq008. Epub 2010 Mar 5.

PMID:
20207682
[PubMed - indexed for MEDLINE]
Free Article
7.

MSMAD: a computationally efficient method for the analysis of noisy array CGH data.

Budinska E, Gelnarova E, Schimek MG.

Bioinformatics. 2009 Mar 15;25(6):703-13. doi: 10.1093/bioinformatics/btp022. Epub 2009 Jan 15.

PMID:
19147666
[PubMed - indexed for MEDLINE]
Free Article
8.

A GC-wave correction algorithm that improves the analytical performance of aCGH.

Leo A, Walker AM, Lebo MS, Hendrickson B, Scholl T, Akmaev VR.

J Mol Diagn. 2012 Nov;14(6):550-9. doi: 10.1016/j.jmoldx.2012.06.002. Epub 2012 Aug 23.

PMID:
22922130
[PubMed - indexed for MEDLINE]
Free Article
9.

VEGA: variational segmentation for copy number detection.

Morganella S, Cerulo L, Viglietto G, Ceccarelli M.

Bioinformatics. 2010 Dec 15;26(24):3020-7. doi: 10.1093/bioinformatics/btq586. Epub 2010 Oct 19.

PMID:
20959380
[PubMed - indexed for MEDLINE]
Free Article
10.

Identification of significant regional genetic variations using continuous CNV values in aCGH data.

Kim KY, Lee GY, Kim J, Jeung HC, Chung HC, Rha SY.

Genomics. 2009 Nov;94(5):317-23. doi: 10.1016/j.ygeno.2009.08.006. Epub 2009 Aug 19.

PMID:
19699295
[PubMed - indexed for MEDLINE]
Free Article
11.

A fast and flexible method for the segmentation of aCGH data.

Ben-Yaacov E, Eldar YC.

Bioinformatics. 2008 Aug 15;24(16):i139-45. doi: 10.1093/bioinformatics/btn272.

PMID:
18689815
[PubMed - indexed for MEDLINE]
Free Article
12.

Genomic alterations of chromosome region 11p as predictive marker by array comparative genomic hybridization in lung adenocarcinoma patients.

Sung JS, Park KH, Kim YH.

Cancer Genet Cytogenet. 2010 Apr 1;198(1):27-34. doi: 10.1016/j.cancergencyto.2009.12.001.

PMID:
20303011
[PubMed - indexed for MEDLINE]
13.

Identification of DNA copy number aberrations associated with metastases of colorectal cancer using array CGH profiles.

Nakao M, Kawauchi S, Furuya T, Uchiyama T, Adachi J, Okada T, Ikemoto K, Oga A, Sasaki K.

Cancer Genet Cytogenet. 2009 Jan 15;188(2):70-6. doi: 10.1016/j.cancergencyto.2008.09.013.

PMID:
19100508
[PubMed - indexed for MEDLINE]
14.

CGHPRO -- a comprehensive data analysis tool for array CGH.

Chen W, Erdogan F, Ropers HH, Lenzner S, Ullmann R.

BMC Bioinformatics. 2005 Apr 5;6:85.

PMID:
15807904
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

CGHsweep: an algorithm for analyzing chromosomal aberrations in genome using aCGH profiles.

Karmaker A, Kwek S.

In Silico Biol. 2007;7(6):639-49.

PMID:
18467776
[PubMed - indexed for MEDLINE]
16.

Robust smooth segmentation approach for array CGH data analysis.

Huang J, Gusnanto A, O'Sullivan K, Staaf J, Borg A, Pawitan Y.

Bioinformatics. 2007 Sep 15;23(18):2463-9. Epub 2007 Jul 27.

PMID:
17660206
[PubMed - indexed for MEDLINE]
Free Article
17.

Computational methods for identification of recurrent copy number alteration patterns by array CGH.

Shah SP.

Cytogenet Genome Res. 2008;123(1-4):343-51. doi: 10.1159/000184726. Epub 2009 Mar 11. Review.

PMID:
19287173
[PubMed - indexed for MEDLINE]
18.

Robust smoothing of quantitative genomic data using second-generation wavelets and bivariate shrinkage.

Hatsuda H.

IEEE Trans Biomed Eng. 2012 Aug;59(8):2099-102. doi: 10.1109/TBME.2012.2198062. Epub 2012 May 7.

PMID:
22581128
[PubMed - indexed for MEDLINE]
19.

Array-based comparative genomic hybridization as a tool for analyzing the leukemia genome.

Strefford JC, Parker H.

Methods Mol Biol. 2009;538:151-77. doi: 10.1007/978-1-59745-418-6_8.

PMID:
19277573
[PubMed - indexed for MEDLINE]
20.

Smoothing waves in array CGH tumor profiles.

van de Wiel MA, Brosens R, Eilers PH, Kumps C, Meijer GA, Menten B, Sistermans E, Speleman F, Timmerman ME, Ylstra B.

Bioinformatics. 2009 May 1;25(9):1099-104. doi: 10.1093/bioinformatics/btp132. Epub 2009 Mar 10.

PMID:
19276148
[PubMed - indexed for MEDLINE]
Free Article

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