Format
Items per page
Sort by

Send to:

Choose Destination

Results: 1 to 20 of 32

1.

Mimosa: mixture model of co-expression to detect modulators of regulatory interaction.

Hansen M, Everett L, Singh L, Hannenhalli S.

Algorithms Mol Biol. 2010 Jan 4;5:4. doi: 10.1186/1748-7188-5-4.

PMID:
20047660
[PubMed]
Free PMC Article
2.

Inter- and intra-combinatorial regulation by transcription factors and microRNAs.

Zhou Y, Ferguson J, Chang JT, Kluger Y.

BMC Genomics. 2007 Oct 30;8:396.

PMID:
17971223
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Selection of thermodynamic models for combinatorial control of multiple transcription factors in early differentiation of embryonic stem cells.

Chen CC, Zhu XG, Zhong S.

BMC Genomics. 2008;9 Suppl 1:S18. doi: 10.1186/1471-2164-9-S1-S18.

PMID:
18366607
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Meta-coexpression conservation analysis of microarray data: a "subset" approach provides insight into brain-derived neurotrophic factor regulation.

Aid-Pavlidis T, Pavlidis P, Timmusk T.

BMC Genomics. 2009 Sep 8;10:420. doi: 10.1186/1471-2164-10-420.

PMID:
19737418
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

A copula method for modeling directional dependence of genes.

Kim JM, Jung YS, Sungur EA, Han KH, Park C, Sohn I.

BMC Bioinformatics. 2008 May 1;9:225. doi: 10.1186/1471-2105-9-225.

PMID:
18447957
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Prioritization of gene regulatory interactions from large-scale modules in yeast.

Lee HJ, Manke T, Bringas R, Vingron M.

BMC Bioinformatics. 2008 Jan 22;9:32. doi: 10.1186/1471-2105-9-32.

PMID:
18211684
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

An equilibrium partitioning model connecting gene expression and cis-motif content.

Mellor J, DeLisi C.

Bioinformatics. 2006 Jul 15;22(14):e368-74.

PMID:
16873495
[PubMed - indexed for MEDLINE]
Free Article
8.

Dynamic modeling of cis-regulatory circuits and gene expression prediction via cross-gene identification.

Lin LH, Lee HC, Li WH, Chen BS.

BMC Bioinformatics. 2005 Oct 18;6:258.

PMID:
16232312
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Human gene coexpression landscape: confident network derived from tissue transcriptomic profiles.

Prieto C, RisueƱo A, Fontanillo C, De las Rivas J.

PLoS One. 2008;3(12):e3911. doi: 10.1371/journal.pone.0003911. Epub 2008 Dec 15.

PMID:
19081792
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Network motif-based identification of transcription factor-target gene relationships by integrating multi-source biological data.

Zhang Y, Xuan J, de los Reyes BG, Clarke R, Ressom HW.

BMC Bioinformatics. 2008 Apr 21;9:203. doi: 10.1186/1471-2105-9-203.

PMID:
18426580
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Predicting combinatorial binding of transcription factors to regulatory elements in the human genome by association rule mining.

Morgan XC, Ni S, Miranker DP, Iyer VR.

BMC Bioinformatics. 2007 Nov 15;8:445.

PMID:
18005433
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Constructing gene co-expression networks and predicting functions of unknown genes by random matrix theory.

Luo F, Yang Y, Zhong J, Gao H, Khan L, Thompson DK, Zhou J.

BMC Bioinformatics. 2007 Aug 14;8:299.

PMID:
17697349
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Computational analysis of tissue-specific combinatorial gene regulation: predicting interaction between transcription factors in human tissues.

Yu X, Lin J, Zack DJ, Qian J.

Nucleic Acids Res. 2006;34(17):4925-36. Epub 2006 Sep 18.

PMID:
16982645
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Prediction of regulatory networks: genome-wide identification of transcription factor targets from gene expression data.

Qian J, Lin J, Luscombe NM, Yu H, Gerstein M.

Bioinformatics. 2003 Oct 12;19(15):1917-26.

PMID:
14555624
[PubMed - indexed for MEDLINE]
Free Article
15.

Subgroup analyses in randomised controlled trials: quantifying the risks of false-positives and false-negatives.

Brookes ST, Whitley E, Peters TJ, Mulheran PA, Egger M, Davey Smith G.

Health Technol Assess. 2001;5(33):1-56. Review.

PMID:
11701102
[PubMed - indexed for MEDLINE]
Free Article
16.

A generic approach to identify Transcription Factor-specific operator motifs; Inferences for LacI-family mediated regulation in Lactobacillus plantarum WCFS1.

Francke C, Kerkhoven R, Wels M, Siezen RJ.

BMC Genomics. 2008 Mar 27;9:145. doi: 10.1186/1471-2164-9-145.

PMID:
18371204
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Exploiting combinatorial cultivation conditions to infer transcriptional regulation.

Knijnenburg TA, de Winde JH, Daran JM, Daran-Lapujade P, Pronk JT, Reinders MJ, Wessels LF.

BMC Genomics. 2007 Jan 22;8:25.

PMID:
17241460
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Modeling the solubility behavior of CO(2), H(2), and Xe in [C(n)-mim][Tf(2)N] ionic liquids.

Andreu JS, Vega LF.

J Phys Chem B. 2008 Dec 4;112(48):15398-406. doi: 10.1021/jp807484g.

PMID:
18989904
[PubMed]
19.

Quantifying the relationship between co-expression, co-regulation and gene function.

Allocco DJ, Kohane IS, Butte AJ.

BMC Bioinformatics. 2004 Feb 25;5:18.

PMID:
15053845
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

The evolutionary influence of binding site organisation on gene regulatory networks.

Cooper MB, Loose M, Brookfield JF.

Biosystems. 2009 May;96(2):185-93. doi: 10.1016/j.biosystems.2009.02.001. Epub 2009 Feb 21.

PMID:
19428984
[PubMed - indexed for MEDLINE]
Format
Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

Write to the Help Desk