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Similar articles for PubMed (Select 20033048)

1.

A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea.

Wu D, Hugenholtz P, Mavromatis K, Pukall R, Dalin E, Ivanova NN, Kunin V, Goodwin L, Wu M, Tindall BJ, Hooper SD, Pati A, Lykidis A, Spring S, Anderson IJ, D'haeseleer P, Zemla A, Singer M, Lapidus A, Nolan M, Copeland A, Han C, Chen F, Cheng JF, Lucas S, Kerfeld C, Lang E, Gronow S, Chain P, Bruce D, Rubin EM, Kyrpides NC, Klenk HP, Eisen JA.

Nature. 2009 Dec 24;462(7276):1056-60. doi: 10.1038/nature08656.

2.

Lokiarchaeota: eukaryote-like missing links from microbial dark matter?

Nasir A, Kim KM, Caetano-Anollés G.

Trends Microbiol. 2015 Jun 22. pii: S0966-842X(15)00129-8. doi: 10.1016/j.tim.2015.06.001. [Epub ahead of print]

PMID:
26112912
3.

Repetitive element signature-based visualization, distance computation, and classification of 1766 microbial genomes.

Lee KH, Shin KS, Lim D, Kim WC, Chung BC, Han GB, Roh J, Cho DH, Cho K.

Genomics. 2015 Jul;106(1):30-42. doi: 10.1016/j.ygeno.2015.04.004. Epub 2015 Apr 23.

PMID:
25918033
4.

The use of evolutionary approaches to understand single cell genomes.

Luo H.

Front Microbiol. 2015 Mar 10;6:174. doi: 10.3389/fmicb.2015.00191. eCollection 2015.

5.

Correction: a bioenergetic basis for membrane divergence in archaea and bacteria.

PLOS Biology Staff.

PLoS Biol. 2015 Mar 20;13(3):e1002102. doi: 10.1371/journal.pbio.1002102. eCollection 2015 Mar. No abstract available.

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8.

Past and future species definitions for Bacteria and Archaea.

Rosselló-Móra R, Amann R.

Syst Appl Microbiol. 2015 Jun;38(4):209-216. doi: 10.1016/j.syapm.2015.02.001. Epub 2015 Feb 20. Review.

PMID:
25747618
9.

Concordance and discordance of sequence survey methods for molecular epidemiology.

Castro-Nallar E, Hasan NA, Cebula TA, Colwell RR, Robison RA, Johnson WE, Crandall KA.

PeerJ. 2015 Feb 17;3:e761. doi: 10.7717/peerj.761. eCollection 2015.

10.

Ecology and exploration of the rare biosphere.

Lynch MD, Neufeld JD.

Nat Rev Microbiol. 2015 Apr;13(4):217-29. doi: 10.1038/nrmicro3400. Epub 2015 Mar 2. Review.

PMID:
25730701
11.

Genomic expansion of domain archaea highlights roles for organisms from new phyla in anaerobic carbon cycling.

Castelle CJ, Wrighton KC, Thomas BC, Hug LA, Brown CT, Wilkins MJ, Frischkorn KR, Tringe SG, Singh A, Markillie LM, Taylor RC, Williams KH, Banfield JF.

Curr Biol. 2015 Mar 16;25(6):690-701. doi: 10.1016/j.cub.2015.01.014. Epub 2015 Feb 19.

PMID:
25702576
12.

Extending the conserved phylogenetic core of archaea disentangles the evolution of the third domain of life.

Petitjean C, Deschamps P, López-García P, Moreira D, Brochier-Armanet C.

Mol Biol Evol. 2015 May;32(5):1242-54. doi: 10.1093/molbev/msv015. Epub 2015 Feb 6.

PMID:
25660375
13.

Bacterial proteins pinpoint a single eukaryotic root.

Derelle R, Torruella G, Klimeš V, Brinkmann H, Kim E, Vlček Č, Lang BF, Eliáš M.

Proc Natl Acad Sci U S A. 2015 Feb 17;112(7):E693-9. doi: 10.1073/pnas.1420657112. Epub 2015 Feb 2.

PMID:
25646484
14.

Update on RefSeq microbial genomes resources.

Tatusova T, Ciufo S, Federhen S, Fedorov B, McVeigh R, O'Neill K, Tolstoy I, Zaslavsky L.

Nucleic Acids Res. 2015 Jan;43(Database issue):D599-605. doi: 10.1093/nar/gku1062. Epub 2014 Dec 15.

15.
16.

Flexibility and symmetry of prokaryotic genome rearrangement reveal lineage-associated core-gene-defined genome organizational frameworks.

Kang Y, Gu C, Yuan L, Wang Y, Zhu Y, Li X, Luo Q, Xiao J, Jiang D, Qian M, Ahmed Khan A, Chen F, Zhang Z, Yu J.

MBio. 2014 Nov 25;5(6):e01867. doi: 10.1128/mBio.01867-14.

17.

rrnDB: improved tools for interpreting rRNA gene abundance in bacteria and archaea and a new foundation for future development.

Stoddard SF, Smith BJ, Hein R, Roller BR, Schmidt TM.

Nucleic Acids Res. 2015 Jan;43(Database issue):D593-8. doi: 10.1093/nar/gku1201. Epub 2014 Nov 20.

18.

MBGD update 2015: microbial genome database for flexible ortholog analysis utilizing a diverse set of genomic data.

Uchiyama I, Mihara M, Nishide H, Chiba H.

Nucleic Acids Res. 2015 Jan;43(Database issue):D270-6. doi: 10.1093/nar/gku1152. Epub 2014 Nov 14.

19.

The integrated microbial genome resource of analysis.

Checcucci A, Mengoni A.

Methods Mol Biol. 2015;1231:289-95. doi: 10.1007/978-1-4939-1720-4_18.

PMID:
25343872
20.

Defining orthologs and pangenome size metrics.

Bosi E, Fani R, Fondi M.

Methods Mol Biol. 2015;1231:191-202. doi: 10.1007/978-1-4939-1720-4_13.

PMID:
25343867
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