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Computational approaches for understanding the evolution of DNA methylation in animals.

Yi SV, Goodisman MA.

Epigenetics. 2009 Nov 16;4(8):551-6. Epub 2009 Nov 18. Review.


A comparative study for characterisation and prediction of tissue-specific DNA methylation of CpG islands in chromosomes 6, 20 and 22.

Ali I, Seker H.

Conf Proc IEEE Eng Med Biol Soc. 2010;2010:1832-5. doi: 10.1109/IEMBS.2010.5626437.


Functional conservation of DNA methylation in the pea aphid and the honeybee.

Hunt BG, Brisson JA, Yi SV, Goodisman MA.

Genome Biol Evol. 2010;2:719-28. doi: 10.1093/gbe/evq057. Epub 2010 Sep 20.


Epigenetic regulation of the honey bee transcriptome: unravelling the nature of methylated genes.

Foret S, Kucharski R, Pittelkow Y, Lockett GA, Maleszka R.

BMC Genomics. 2009 Oct 14;10:472. doi: 10.1186/1471-2164-10-472.


Fundamental diversity of human CpG islands at multiple biological levels.

Zeng J, Nagrajan HK, Yi SV.

Epigenetics. 2014 Apr;9(4):483-91. doi: 10.4161/epi.27654. Epub 2014 Jan 13.


CpG islands undermethylation in human genomic regions under selective pressure.

Cocozza S, Akhtar MM, Miele G, Monticelli A.

PLoS One. 2011;6(8):e23156. doi: 10.1371/journal.pone.0023156. Epub 2011 Aug 2.


Contribution of intragenic DNA methylation in mouse gametic DNA methylomes to establish oocyte-specific heritable marks.

Kobayashi H, Sakurai T, Imai M, Takahashi N, Fukuda A, Yayoi O, Sato S, Nakabayashi K, Hata K, Sotomaru Y, Suzuki Y, Kono T.

PLoS Genet. 2012 Jan;8(1):e1002440. doi: 10.1371/journal.pgen.1002440. Epub 2012 Jan 5.


Prediction of epigenetically regulated genes in breast cancer cell lines.

Loss LA, Sadanandam A, Durinck S, Nautiyal S, Flaucher D, Carlton VE, Moorhead M, Lu Y, Gray JW, Faham M, Spellman P, Parvin B.

BMC Bioinformatics. 2010 Jun 4;11:305. doi: 10.1186/1471-2105-11-305.


Function and evolution of DNA methylation in Nasonia vitripennis.

Wang X, Wheeler D, Avery A, Rago A, Choi JH, Colbourne JK, Clark AG, Werren JH.

PLoS Genet. 2013;9(10):e1003872. doi: 10.1371/journal.pgen.1003872. Epub 2013 Oct 10.


DNA methylation patterns provide insight into epigenetic regulation in the Pacific oyster (Crassostrea gigas).

Gavery MR, Roberts SB.

BMC Genomics. 2010 Aug 27;11:483. doi: 10.1186/1471-2164-11-483.


CpG island methylation in a mouse model of lymphoma is driven by the genetic configuration of tumor cells.

Opavsky R, Wang SH, Trikha P, Raval A, Huang Y, Wu YZ, Rodriguez B, Keller B, Liyanarachchi S, Wei G, Davuluri RV, Weinstein M, Felsher D, Ostrowski M, Leone G, Plass C.

PLoS Genet. 2007 Sep;3(9):1757-69. Epub 2007 Aug 16.


Epigenetics and evolution.

Mendizabal I, Keller TE, Zeng J, Yi SV.

Integr Comp Biol. 2014 Jul;54(1):31-42. doi: 10.1093/icb/icu040. Epub 2014 May 16. Review.


Methylation analysis by DNA immunoprecipitation.

Thu KL, Pikor LA, Kennett JY, Alvarez CE, Lam WL.

J Cell Physiol. 2010 Mar;222(3):522-31. doi: 10.1002/jcp.22009. Review.


Distinct DNA methylation dynamics of spermatogenic cell-specific intronless genes is associated with CpG content.

Kato Y, Nozaki M.

PLoS One. 2012;7(8):e43658. doi: 10.1371/journal.pone.0043658. Epub 2012 Aug 27.


Profile analysis and prediction of tissue-specific CpG island methylation classes.

Previti C, Harari O, Zwir I, del Val C.

BMC Bioinformatics. 2009 Apr 21;10:116. doi: 10.1186/1471-2105-10-116.


Genomic imprinting and methylation: epigenetic canalization and conflict.

Wilkins JF.

Trends Genet. 2005 Jun;21(6):356-65. Review.


Principles and challenges of genomewide DNA methylation analysis.

Laird PW.

Nat Rev Genet. 2010 Mar;11(3):191-203. doi: 10.1038/nrg2732. Review.


CpG methylation is targeted to transcription units in an invertebrate genome.

Suzuki MM, Kerr AR, De Sousa D, Bird A.

Genome Res. 2007 May;17(5):625-31. Epub 2007 Apr 9.


Conserved and divergent patterns of DNA methylation in higher vertebrates.

Jiang N, Wang L, Chen J, Wang L, Leach L, Luo Z.

Genome Biol Evol. 2014 Oct 28;6(11):2998-3014. doi: 10.1093/gbe/evu238.

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