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Items: 1 to 20 of 87

1.

Quantifying the biological significance of gene ontology biological processes--implications for the analysis of systems-wide data.

Chagoyen M, Pazos F.

Bioinformatics. 2010 Feb 1;26(3):378-84. doi: 10.1093/bioinformatics/btp663. Epub 2009 Dec 4.

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Globally predicting protein functions based on co-expressed protein-protein interaction networks and ontology taxonomy similarities.

Zhu M, Gao L, Guo Z, Li Y, Wang D, Wang J, Wang C.

Gene. 2007 Apr 15;391(1-2):113-9. Epub 2006 Dec 22.

PMID:
17289301
4.

Gene set internal coherence in the context of functional profiling.

Montaner D, Minguez P, Al-Shahrour F, Dopazo J.

BMC Genomics. 2009 Apr 27;10:197. doi: 10.1186/1471-2164-10-197.

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ADGO: analysis of differentially expressed gene sets using composite GO annotation.

Nam D, Kim SB, Kim SK, Yang S, Kim SY, Chu IS.

Bioinformatics. 2006 Sep 15;22(18):2249-53. Epub 2006 Jul 12.

7.

Large-scale protein annotation through gene ontology.

Xie H, Wasserman A, Levine Z, Novik A, Grebinskiy V, Shoshan A, Mintz L.

Genome Res. 2002 May;12(5):785-94.

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The use of gene ontology evidence codes in preventing classifier assessment bias.

Rogers MF, Ben-Hur A.

Bioinformatics. 2009 May 1;25(9):1173-7. doi: 10.1093/bioinformatics/btp122. Epub 2009 Mar 2.

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12.

Gene Ontology annotation of the rice blast fungus, Magnaporthe oryzae.

Meng S, Brown DE, Ebbole DJ, Torto-Alalibo T, Oh YY, Deng J, Mitchell TK, Dean RA.

BMC Microbiol. 2009 Feb 19;9 Suppl 1:S8. doi: 10.1186/1471-2180-9-S1-S8. Review.

13.

Functional evaluation of domain-domain interactions and human protein interaction networks.

Schlicker A, Huthmacher C, Ramírez F, Lengauer T, Albrecht M.

Bioinformatics. 2007 Apr 1;23(7):859-65.

14.

Incorporating functional inter-relationships into protein function prediction algorithms.

Pandey G, Myers CL, Kumar V.

BMC Bioinformatics. 2009 May 12;10:142. doi: 10.1186/1471-2105-10-142.

15.

Functional genomics and proteomics in the clinical neurosciences: data mining and bioinformatics.

Phan JH, Quo CF, Wang MD.

Prog Brain Res. 2006;158:83-108. Review.

PMID:
17027692
16.

GO-At: in silico prediction of gene function in Arabidopsis thaliana by combining heterogeneous data.

Bradford JR, Needham CJ, Tedder P, Care MA, Bulpitt AJ, Westhead DR.

Plant J. 2010 Feb;61(4):713-21. doi: 10.1111/j.1365-313X.2009.04097.x. Epub 2009 Nov 27.

17.

A transversal approach to predict gene product networks from ontology-based similarity.

Chabalier J, Mosser J, Burgun A.

BMC Bioinformatics. 2007 Jul 2;8:235.

18.

Predicting gene ontology functions from protein's regional surface structures.

Liu ZP, Wu LY, Wang Y, Chen L, Zhang XS.

BMC Bioinformatics. 2007 Dec 11;8:475.

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FunSimMat: a comprehensive functional similarity database.

Schlicker A, Albrecht M.

Nucleic Acids Res. 2008 Jan;36(Database issue):D434-9. Epub 2007 Oct 11.

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