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Results: 1 to 20 of 119

Similar articles for PubMed (Select 19956260)

1.

Exceptional structured noncoding RNAs revealed by bacterial metagenome analysis.

Weinberg Z, Perreault J, Meyer MM, Breaker RR.

Nature. 2009 Dec 3;462(7273):656-9. doi: 10.1038/nature08586.

2.

Comparative genomics reveals 104 candidate structured RNAs from bacteria, archaea, and their metagenomes.

Weinberg Z, Wang JX, Bogue J, Yang J, Corbino K, Moy RH, Breaker RR.

Genome Biol. 2010;11(3):R31. doi: 10.1186/gb-2010-11-3-r31. Epub 2010 Mar 15.

3.

Identification of putative noncoding RNA genes in the Burkholderia cenocepacia J2315 genome.

Coenye T, Drevinek P, Mahenthiralingam E, Shah SA, Gill RT, Vandamme P, Ussery DW.

FEMS Microbiol Lett. 2007 Nov;276(1):83-92.

4.

Bacterial noncoding Y RNAs are widespread and mimic tRNAs.

Chen X, Sim S, Wurtmann EJ, Feke A, Wolin SL.

RNA. 2014 Nov;20(11):1715-24. doi: 10.1261/rna.047241.114. Epub 2014 Sep 17.

PMID:
25232022
5.

Identification of 22 candidate structured RNAs in bacteria using the CMfinder comparative genomics pipeline.

Weinberg Z, Barrick JE, Yao Z, Roth A, Kim JN, Gore J, Wang JX, Lee ER, Block KF, Sudarsan N, Neph S, Tompa M, Ruzzo WL, Breaker RR.

Nucleic Acids Res. 2007;35(14):4809-19. Epub 2007 Jul 9.

6.

The challenge of regulation in a minimal photoautotroph: non-coding RNAs in Prochlorococcus.

Steglich C, Futschik ME, Lindell D, Voss B, Chisholm SW, Hess WR.

PLoS Genet. 2008 Aug 29;4(8):e1000173. doi: 10.1371/journal.pgen.1000173. Erratum in: PLoS Genet. 2008 Nov;4(11):. doi:10.1371/annotation/411b74ae-c4ce-43c9-bdd2-60c2bf60e672.

7.

Structure and functional properties of prokaryotic small noncoding RNAs.

Mikulík K.

Folia Microbiol (Praha). 2003;48(4):443-68. Review.

PMID:
14533476
8.

Identification of small noncoding RNAs in Helicobacter pylori by a bioinformatics-based approach.

Xiao B, Li W, Guo G, Li B, Liu Z, Jia K, Guo Y, Mao X, Zou Q.

Curr Microbiol. 2009 Mar;58(3):258-63. doi: 10.1007/s00284-008-9318-2. Epub 2009 Jan 3.

PMID:
19123032
9.

In-line probing analysis of riboswitches.

Regulski EE, Breaker RR.

Methods Mol Biol. 2008;419:53-67. doi: 10.1007/978-1-59745-033-1_4.

PMID:
18369975
10.

The amazing world of bacterial structured RNAs.

Westhof E.

Genome Biol. 2010;11(3):108. doi: 10.1186/gb-2010-11-3-108. Epub 2010 Mar 15. Review.

11.

Identification of cyanobacterial non-coding RNAs by comparative genome analysis.

Axmann IM, Kensche P, Vogel J, Kohl S, Herzel H, Hess WR.

Genome Biol. 2005;6(9):R73. Epub 2005 Aug 17.

12.

High-throughput, kingdom-wide prediction and annotation of bacterial non-coding RNAs.

Livny J, Teonadi H, Livny M, Waldor MK.

PLoS One. 2008 Sep 12;3(9):e3197. doi: 10.1371/journal.pone.0003197. Erratum in: PLoS ONE. 2008;3(11). doi: 10.1371/annotation/a03e1870-1dd7-4c16-8c46-2268eeb2a50a.

13.

Riboswitches and the role of noncoding RNAs in bacterial metabolic control.

Winkler WC.

Curr Opin Chem Biol. 2005 Dec;9(6):594-602. Epub 2005 Oct 13. Review.

PMID:
16226486
14.

Biocomputational prediction of non-coding RNAs in model cyanobacteria.

Voss B, Georg J, Schön V, Ude S, Hess WR.

BMC Genomics. 2009 Mar 23;10:123. doi: 10.1186/1471-2164-10-123.

15.

Abundance of type I toxin-antitoxin systems in bacteria: searches for new candidates and discovery of novel families.

Fozo EM, Makarova KS, Shabalina SA, Yutin N, Koonin EV, Storz G.

Nucleic Acids Res. 2010 Jun;38(11):3743-59. doi: 10.1093/nar/gkq054. Epub 2010 Feb 15.

16.

Molecular chaperones and quality control in noncoding RNA biogenesis.

Wolin SL, Wurtmann EJ.

Cold Spring Harb Symp Quant Biol. 2006;71:505-11. Review.

PMID:
17381333
17.

The suboptimal structures find the optimal RNAs: homology search for bacterial non-coding RNAs using suboptimal RNA structures.

Pánek J, Krásny L, Bobek J, Jezková E, Korelusová J, Vohradsky J.

Nucleic Acids Res. 2011 Apr;39(8):3418-26. doi: 10.1093/nar/gkq1186. Epub 2010 Dec 30.

18.

Comparative analysis of non-coding RNAs in the antibiotic-producing Streptomyces bacteria.

Moody MJ, Young RA, Jones SE, Elliot MA.

BMC Genomics. 2013 Aug 16;14:558. doi: 10.1186/1471-2164-14-558.

19.

Identification of candidate structured RNAs in the marine organism 'Candidatus Pelagibacter ubique'.

Meyer MM, Ames TD, Smith DP, Weinberg Z, Schwalbach MS, Giovannoni SJ, Breaker RR.

BMC Genomics. 2009 Jun 16;10:268. doi: 10.1186/1471-2164-10-268.

20.

Searching for non-coding RNAs in genomic sequences using ncRNAscout.

Bao M, Cervantes Cervantes M, Zhong L, Wang JT.

Genomics Proteomics Bioinformatics. 2012 Apr;10(2):114-21. doi: 10.1016/j.gpb.2012.05.004. Epub 2012 Jun 9.

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