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Results: 1 to 20 of 116

1.

High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera.

Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS.

BMC Genomics. 2009 Nov 25;10:558. doi: 10.1186/1471-2164-10-558. Corrected and republished in: BMC Genomics. 2010;11:109.

PMID:
19939267
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Correction: High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera.

Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS.

BMC Genomics. 2010 Feb 12;11:109. doi: 10.1186/1471-2164-11-109.

PMID:
20152027
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Identification of microRNAs from Amur grape (Vitis amurensis Rupr.) by deep sequencing and analysis of microRNA variations with bioinformatics.

Wang C, Han J, Liu C, Kibet KN, Kayesh E, Shangguan L, Li X, Fang J.

BMC Genomics. 2012 Mar 29;13:122. doi: 10.1186/1471-2164-13-122.

PMID:
22455456
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis.

Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J.

Plant J. 2010 Jun 1;62(6):960-76. doi: 10.1111/j.0960-7412.2010.04208.x.

PMID:
20230504
[PubMed - indexed for MEDLINE]
5.

Deep sequencing of grapevine flower and berry short RNA library for discovery of novel microRNAs and validation of precise sequences of grapevine microRNAs deposited in miRBase.

Wang C, Wang X, Kibet NK, Song C, Zhang C, Li X, Han J, Fang J.

Physiol Plant. 2011 Sep;143(1):64-81. doi: 10.1111/j.1399-3054.2011.01481.x. Epub 2011 Jun 9.

PMID:
21496033
[PubMed - indexed for MEDLINE]
6.

High-throughput sequence analysis of small RNAs in grapevine (Vitis vinifera L.) affected by grapevine leafroll disease.

Alabi OJ, Zheng Y, Jagadeeswaran G, Sunkar R, Naidu RA.

Mol Plant Pathol. 2012 Dec;13(9):1060-76. doi: 10.1111/j.1364-3703.2012.00815.x. Epub 2012 Jul 24.

PMID:
22827483
[PubMed - indexed for MEDLINE]
7.

Characterization of the small RNA component of leaves and fruits from four different cucurbit species.

Jagadeeswaran G, Nimmakayala P, Zheng Y, Gowdu K, Reddy UK, Sunkar R.

BMC Genomics. 2012 Jul 23;13:329. doi: 10.1186/1471-2164-13-329.

PMID:
22823569
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Identification of Taxus microRNAs and their targets with high-throughput sequencing and degradome analysis.

Hao DC, Yang L, Xiao PG, Liu M.

Physiol Plant. 2012 Dec;146(4):388-403. doi: 10.1111/j.1399-3054.2012.01668.x. Epub 2012 Jul 25.

PMID:
22708792
[PubMed - indexed for MEDLINE]
9.

Transcriptome analysis at four developmental stages of grape berry (Vitis vinifera cv. Shiraz) provides insights into regulated and coordinated gene expression.

Sweetman C, Wong DC, Ford CM, Drew DP.

BMC Genomics. 2012 Dec 11;13:691. doi: 10.1186/1471-2164-13-691.

PMID:
23227855
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Transcriptomic and metabolite analyses of Cabernet Sauvignon grape berry development.

Deluc LG, Grimplet J, Wheatley MD, Tillett RL, Quilici DR, Osborne C, Schooley DA, Schlauch KA, Cushman JC, Cramer GR.

BMC Genomics. 2007 Nov 22;8:429.

PMID:
18034876
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

The grapevine expression atlas reveals a deep transcriptome shift driving the entire plant into a maturation program.

Fasoli M, Dal Santo S, Zenoni S, Tornielli GB, Farina L, Zamboni A, Porceddu A, Venturini L, Bicego M, Murino V, Ferrarini A, Delledonne M, Pezzotti M.

Plant Cell. 2012 Sep;24(9):3489-505. doi: 10.1105/tpc.112.100230. Epub 2012 Sep 4.

PMID:
22948079
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Identification and analysis of red sea mangrove (Avicennia marina) microRNAs by high-throughput sequencing and their association with stress responses.

Khraiwesh B, Pugalenthi G, Fedoroff NV.

PLoS One. 2013 Apr 8;8(4):e60774. doi: 10.1371/journal.pone.0060774. Print 2013.

PMID:
23593307
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Identification and characterization of microRNAs and endogenous siRNAs in Schistosoma japonicum.

Hao L, Cai P, Jiang N, Wang H, Chen Q.

BMC Genomics. 2010 Jan 21;11:55. doi: 10.1186/1471-2164-11-55.

PMID:
20092619
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Ontology-oriented retrieval of putative microRNAs in Vitis vinifera via GrapeMiRNA: a web database of de novo predicted grape microRNAs.

Lazzari B, Caprera A, Cestaro A, Merelli I, Del Corvo M, Fontana P, Milanesi L, Velasco R, Stella A.

BMC Plant Biol. 2009 Jun 29;9:82. doi: 10.1186/1471-2229-9-82.

PMID:
19563653
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Small RNA profiling of virus-infected grapevines: evidences for virus infection-associated and variety-specific miRNAs.

Singh K, Talla A, Qiu W.

Funct Integr Genomics. 2012 Nov;12(4):659-69. doi: 10.1007/s10142-012-0292-1. Epub 2012 Aug 19.

PMID:
22903235
[PubMed - indexed for MEDLINE]
16.

A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains.

Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C.

Genome Res. 2008 Sep;18(9):1456-65. doi: 10.1101/gr.075572.107. Epub 2008 Aug 7.

PMID:
18687877
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Alternative mRNA processing increases the complexity of microRNA-based gene regulation in Arabidopsis.

Yang X, Zhang H, Li L.

Plant J. 2012 May;70(3):421-31. doi: 10.1111/j.1365-313X.2011.04882.x. Epub 2012 Jan 16.

PMID:
22247970
[PubMed - indexed for MEDLINE]
18.

Cloning and characterization of small non-coding RNAs from grape.

Carra A, Mica E, Gambino G, Pindo M, Moser C, Pè ME, Schubert A.

Plant J. 2009 Sep;59(5):750-63. doi: 10.1111/j.1365-313X.2009.03906.x. Epub 2009 May 5.

PMID:
19453456
[PubMed - indexed for MEDLINE]
19.

A genome-wide characterization of microRNA genes in maize.

Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D.

PLoS Genet. 2009 Nov;5(11):e1000716. doi: 10.1371/journal.pgen.1000716. Epub 2009 Nov 20.

PMID:
19936050
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Combining next-generation pyrosequencing with microarray for large scale expression analysis in non-model species.

Bellin D, Ferrarini A, Chimento A, Kaiser O, Levenkova N, Bouffard P, Delledonne M.

BMC Genomics. 2009 Nov 24;10:555. doi: 10.1186/1471-2164-10-555.

PMID:
19930683
[PubMed - indexed for MEDLINE]
Free PMC Article

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