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PrimerBank: a resource of human and mouse PCR primer pairs for gene expression detection and quantification.

Spandidos A, Wang X, Wang H, Seed B.

Nucleic Acids Res. 2010 Jan;38(Database issue):D792-9. doi: 10.1093/nar/gkp1005. Epub 2009 Nov 11.


PrimerBank: a PCR primer database for quantitative gene expression analysis, 2012 update.

Wang X, Spandidos A, Wang H, Seed B.

Nucleic Acids Res. 2012 Jan;40(Database issue):D1144-9. doi: 10.1093/nar/gkr1013. Epub 2011 Nov 15.


methBLAST and methPrimerDB: web-tools for PCR based methylation analysis.

Pattyn F, Hoebeeck J, Robbrecht P, Michels E, De Paepe A, Bottu G, Coornaert D, Herzog R, Speleman F, Vandesompele J.

BMC Bioinformatics. 2006 Nov 9;7:496.


A PCR primer bank for quantitative gene expression analysis.

Wang X, Seed B.

Nucleic Acids Res. 2003 Dec 15;31(24):e154.


A comprehensive collection of experimentally validated primers for Polymerase Chain Reaction quantitation of murine transcript abundance.

Spandidos A, Wang X, Wang H, Dragnev S, Thurber T, Seed B.

BMC Genomics. 2008 Dec 24;9:633. doi: 10.1186/1471-2164-9-633.


FlyPrimerBank: an online database for Drosophila melanogaster gene expression analysis and knockdown evaluation of RNAi reagents.

Hu Y, Sopko R, Foos M, Kelley C, Flockhart I, Ammeux N, Wang X, Perkins L, Perrimon N, Mohr SE.

G3 (Bethesda). 2013 Sep 4;3(9):1607-16. doi: 10.1534/g3.113.007021.


RExPrimer: an integrated primer designing tool increases PCR effectiveness by avoiding 3' SNP-in-primer and mis-priming from structural variation.

Piriyapongsa J, Ngamphiw C, Assawamakin A, Wangkumhang P, Suwannasri P, Ruangrit U, Agavatpanitch G, Tongsima S.

BMC Genomics. 2009 Dec 3;10 Suppl 3:S4. doi: 10.1186/1471-2164-10-S3-S4.


ELXR: a resource for rapid exon-directed sequence analysis.

Schageman JJ, Horton CJ, Niu S, Garner HR, Pertsemlidis A.

Genome Biol. 2004;5(5):R36. Epub 2004 Apr 28.


URPD: a specific product primer design tool.

Chuang LY, Cheng YH, Yang CH.

BMC Res Notes. 2012 Jun 19;5:306. doi: 10.1186/1756-0500-5-306.


Database resources of the National Center for Biotechnology Information.

Sayers EW, Barrett T, Benson DA, Bolton E, Bryant SH, Canese K, Chetvernin V, Church DM, Dicuccio M, Federhen S, Feolo M, Geer LY, Helmberg W, Kapustin Y, Landsman D, Lipman DJ, Lu Z, Madden TL, Madej T, Maglott DR, Marchler-Bauer A, Miller V, Mizrachi I, Ostell J, Panchenko A, Pruitt KD, Schuler GD, Sequeira E, Sherry ST, Shumway M, Sirotkin K, Slotta D, Souvorov A, Starchenko G, Tatusova TA, Wagner L, Wang Y, John Wilbur W, Yaschenko E, Ye J.

Nucleic Acids Res. 2010 Jan;38(Database issue):D5-16. doi: 10.1093/nar/gkp967. Epub 2009 Nov 12.


BlotBase: a northern blot database.

Schlamp K, Weinmann A, Krupp M, Maass T, Galle P, Teufel A.

Gene. 2008 Dec 31;427(1-2):47-50. doi: 10.1016/j.gene.2008.08.026. Epub 2008 Sep 18.


BatchPrimer3: a high throughput web application for PCR and sequencing primer design.

You FM, Huo N, Gu YQ, Luo MC, Ma Y, Hane D, Lazo GR, Dvorak J, Anderson OD.

BMC Bioinformatics. 2008 May 29;9:253. doi: 10.1186/1471-2105-9-253.


QuantPrime--a flexible tool for reliable high-throughput primer design for quantitative PCR.

Arvidsson S, Kwasniewski M, Riaño-Pachón DM, Mueller-Roeber B.

BMC Bioinformatics. 2008 Nov 1;9:465. doi: 10.1186/1471-2105-9-465.


V-MitoSNP: visualization of human mitochondrial SNPs.

Chuang LY, Yang CH, Cheng YH, Gu DL, Chang PL, Tsui KH, Chang HW.

BMC Bioinformatics. 2006 Aug 15;7:379.


The 2010 Nucleic Acids Research Database Issue and online Database Collection: a community of data resources.

Cochrane GR, Galperin MY.

Nucleic Acids Res. 2010 Jan;38(Database issue):D1-4. doi: 10.1093/nar/gkp1077. Epub 2009 Dec 3.


EasyExonPrimer: automated primer design for exon sequences.

Wu X, Munroe DJ.

Appl Bioinformatics. 2006;5(2):119-20.


GETPrime: a gene- or transcript-specific primer database for quantitative real-time PCR.

Gubelmann C, Gattiker A, Massouras A, Hens K, David F, Decouttere F, Rougemont J, Deplancke B.

Database (Oxford). 2011 Sep 14;2011:bar040. doi: 10.1093/database/bar040. Print 2011.


AcePrimer: automation of PCR primer design based on gene structure.

McKay SJ, Jones SJ.

Bioinformatics. 2002 Nov;18(11):1538-9.


DePIE: Designing Primers for Protein Interaction Experiments.

Lu G, Hallett M, Pollock S, Thomas D.

Nucleic Acids Res. 2003 Jul 1;31(13):3755-7.

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