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Transfer RNA processing in archaea: unusual pathways and enzymes.

Heinemann IU, Söll D, Randau L.

FEBS Lett. 2010 Jan 21;584(2):303-9. doi: 10.1016/j.febslet.2009.10.067. Epub . Review.


Structure, function, and evolution of the tRNA endonucleases of Archaea: an example of subfunctionalization.

Tocchini-Valentini GD, Fruscoloni P, Tocchini-Valentini GP.

Proc Natl Acad Sci U S A. 2005 Jun 21;102(25):8933-8. Epub 2005 Jun 3.


Disrupted tRNA gene diversity and possible evolutionary scenarios.

Sugahara J, Fujishima K, Morita K, Tomita M, Kanai A.

J Mol Evol. 2009 Nov;69(5):497-504. doi: 10.1007/s00239-009-9294-6. Epub 2009 Oct 14.


tRNA 3' end maturation in archaea has eukaryotic features: the RNase Z from Haloferax volcanii.

Schierling K, Rösch S, Rupprecht R, Schiffer S, Marchfelder A.

J Mol Biol. 2002 Mar 1;316(4):895-902.


Maturation of the 5S rRNA 5' end is catalyzed in vitro by the endonuclease tRNase Z in the archaeon H. volcanii.

Hölzle A, Fischer S, Heyer R, Schütz S, Zacharias M, Walther P, Allers T, Marchfelder A.

RNA. 2008 May;14(5):928-37. doi: 10.1261/rna.933208. Epub 2008 Mar 27.


Modeling the Thermoproteaceae RNase P RNA.

Chan PP, Brown JW, Lowe TM.

RNA Biol. 2012 Sep;9(9):1155-60. doi: 10.4161/rna.21502. Epub 2012 Sep 1.


Discovery of a mini-RNase P in archaea.

McClain WH.

Proc Natl Acad Sci U S A. 2010 Dec 28;107(52):22371-2. doi: 10.1073/pnas.1016812108. Epub 2010 Dec 16. No abstract available.


Comprehensive analysis of archaeal tRNA genes reveals rapid increase of tRNA introns in the order thermoproteales.

Sugahara J, Kikuta K, Fujishima K, Yachie N, Tomita M, Kanai A.

Mol Biol Evol. 2008 Dec;25(12):2709-16. doi: 10.1093/molbev/msn216. Epub 2008 Oct 1.


Fidelity of tRNA 5'-maturation: a possible basis for the functional dependence of archaeal and eukaryal RNase P on multiple protein cofactors.

Chen WY, Singh D, Lai LB, Stiffler MA, Lai HD, Foster MP, Gopalan V.

Nucleic Acids Res. 2012 May;40(10):4666-80. doi: 10.1093/nar/gks013. Epub 2012 Jan 31.


Conservation of substrate recognition mechanisms by tRNA splicing endonucleases.

Fabbri S, Fruscoloni P, Bufardeci E, Di Nicola Negri E, Baldi MI, Attardi DG, Mattoccia E, Tocchini-Valentini GP.

Science. 1998 Apr 10;280(5361):284-6.


tRNA transfers to the limelight.

Hopper AK, Phizicky EM.

Genes Dev. 2003 Jan 15;17(2):162-80. Review. No abstract available.


Two different mechanisms for tRNA ribose methylation in Archaea: a short survey.

Clouet-d'Orval B, Gaspin C, Mougin A.

Biochimie. 2005 Sep-Oct;87(9-10):889-95. Epub 2005 Mar 7.


The making of tRNAs and more - RNase P and tRNase Z.

Hartmann RK, Gössringer M, Späth B, Fischer S, Marchfelder A.

Prog Mol Biol Transl Sci. 2009;85:319-68. doi: 10.1016/S0079-6603(08)00808-8. Review.


RNase P RNAs from some Archaea are catalytically active.

Pannucci JA, Haas ES, Hall TA, Harris JK, Brown JW.

Proc Natl Acad Sci U S A. 1999 Jul 6;96(14):7803-8.


Avatar pre-tRNAs help elucidate the properties of tRNA-splicing endonucleases that produce tRNA from permuted genes.

Tocchini-Valentini GD, Tocchini-Valentini GP.

Proc Natl Acad Sci U S A. 2012 Dec 26;109(52):21325-9. doi: 10.1073/pnas.1219336110. Epub 2012 Dec 11.


C/D box sRNA, CRISPR RNA and tRNA processing in an archaeon with a minimal fragmented genome.

Richter H, Mohr S, Randau L.

Biochem Soc Trans. 2013 Feb 1;41(1):411-5. doi: 10.1042/BST20120276. Review.


The archaeal COG1901/DUF358 SPOUT-methyltransferase members, together with pseudouridine synthase Pus10, catalyze the formation of 1-methylpseudouridine at position 54 of tRNA.

Chatterjee K, Blaby IK, Thiaville PC, Majumder M, Grosjean H, Yuan YA, Gupta R, de Crécy-Lagard V.

RNA. 2012 Mar;18(3):421-33. doi: 10.1261/rna.030841.111. Epub 2012 Jan 24.


Experimental confirmation of a whole set of tRNA molecules in two archaeal species.

Watanabe Y, Kawarabayasi Y.

Int J Mol Sci. 2015 Jan 20;16(1):2187-203. doi: 10.3390/ijms16012187.


A novel three-unit tRNA splicing endonuclease found in ultrasmall Archaea possesses broad substrate specificity.

Fujishima K, Sugahara J, Miller CS, Baker BJ, Di Giulio M, Takesue K, Sato A, Tomita M, Banfield JF, Kanai A.

Nucleic Acids Res. 2011 Dec;39(22):9695-704. doi: 10.1093/nar/gkr692. Epub 2011 Aug 31.

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