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Results: 1 to 20 of 96

1.

Open source bioimage informatics for cell biology.

Swedlow JR, Eliceiri KW.

Trends Cell Biol. 2009 Nov;19(11):656-60. doi: 10.1016/j.tcb.2009.08.007. Epub 2009 Oct 14.

PMID:
19833518
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Bioimage informatics for experimental biology.

Swedlow JR, Goldberg IG, Eliceiri KW; OME Consortium.

Annu Rev Biophys. 2009;38:327-46. doi: 10.1146/annurev.biophys.050708.133641. Review.

PMID:
19416072
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Bioimage informatics: a new area of engineering biology.

Peng H.

Bioinformatics. 2008 Sep 1;24(17):1827-36. doi: 10.1093/bioinformatics/btn346. Epub 2008 Jul 4. Review.

PMID:
18603566
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Why bioimage informatics matters.

Myers G.

Nat Methods. 2012 Jun 28;9(7):659-60. doi: 10.1038/nmeth.2024.

PMID:
22743769
[PubMed - indexed for MEDLINE]
5.

Biological imaging software tools.

Eliceiri KW, Berthold MR, Goldberg IG, Ibáñez L, Manjunath BS, Martone ME, Murphy RF, Peng H, Plant AL, Roysam B, Stuurman N, Swedlow JR, Tomancak P, Carpenter AE.

Nat Methods. 2012 Jun 28;9(7):697-710. doi: 10.1038/nmeth.2084. Erratum in: Nat Methods. 2012 Oct;9(10):1031. Stuurmann, Nico [corrected to Stuurman, Nico].

PMID:
22743775
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Chapter 17: bioimage informatics for systems pharmacology.

Li F, Yin Z, Jin G, Zhao H, Wong ST.

PLoS Comput Biol. 2013 Apr;9(4):e1003043. doi: 10.1371/journal.pcbi.1003043. Epub 2013 Apr 25. Review.

PMID:
23633943
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Current challenges in open-source bioimage informatics.

Cardona A, Tomancak P.

Nat Methods. 2012 Jun 28;9(7):661-5. doi: 10.1038/nmeth.2082.

PMID:
22743770
[PubMed - indexed for MEDLINE]
8.

Bioimage informatics for understanding spatiotemporal dynamics of cellular processes.

Yang G.

Wiley Interdiscip Rev Syst Biol Med. 2013 May-Jun;5(3):367-80. doi: 10.1002/wsbm.1214. Epub 2013 Feb 13. Review.

PMID:
23408597
[PubMed - indexed for MEDLINE]
9.

Rapid development of medical imaging tools with open-source libraries.

Caban JJ, Joshi A, Nagy P.

J Digit Imaging. 2007 Nov;20 Suppl 1:83-93. Epub 2007 Aug 7.

PMID:
17680307
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Icy: an open bioimage informatics platform for extended reproducible research.

de Chaumont F, Dallongeville S, Chenouard N, Hervé N, Pop S, Provoost T, Meas-Yedid V, Pankajakshan P, Lecomte T, Le Montagner Y, Lagache T, Dufour A, Olivo-Marin JC.

Nat Methods. 2012 Jun 28;9(7):690-6. doi: 10.1038/nmeth.2075.

PMID:
22743774
[PubMed - indexed for MEDLINE]
11.

Machine learning in cell biology - teaching computers to recognize phenotypes.

Sommer C, Gerlich DW.

J Cell Sci. 2013 Dec 15;126(Pt 24):5529-39. doi: 10.1242/jcs.123604. Epub 2013 Nov 20. Review.

PMID:
24259662
[PubMed - indexed for MEDLINE]
Free Article
12.

Bioimage Informatics in the context of Drosophila research.

Jug F, Pietzsch T, Preibisch S, Tomancak P.

Methods. 2014 Jun 15;68(1):60-73. doi: 10.1016/j.ymeth.2014.04.004. Epub 2014 Apr 13.

PMID:
24732429
[PubMed - in process]
Free Article
13.

Bioimage informatics: a new category in Bioinformatics.

Peng H, Bateman A, Valencia A, Wren JD.

Bioinformatics. 2012 Apr 15;28(8):1057. doi: 10.1093/bioinformatics/bts111. Epub 2012 Mar 6. No abstract available.

PMID:
22399678
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

An infrastructure for high-throughput microscopy: instrumentation, informatics, and integration.

Vaisberg EA, Lenzi D, Hansen RL, Keon BH, Finer JT.

Methods Enzymol. 2006;414:484-512. Review.

PMID:
17110208
[PubMed - indexed for MEDLINE]
15.

Automated image computing reshapes computational neuroscience.

Peng H, Roysam B, Ascoli GA.

BMC Bioinformatics. 2013 Oct 4;14:293. doi: 10.1186/1471-2105-14-293.

PMID:
24090217
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

New technologies for the human cytome project.

Tárnok A.

J Biol Regul Homeost Agents. 2004 Apr-Jun;18(2):92-5.

PMID:
15471209
[PubMed - indexed for MEDLINE]
17.

Sensor, signal, and image informatics - state of the art and current topics.

Lehmann TM, Aach T, Witte H.

Yearb Med Inform. 2006:57-67. Review.

PMID:
17051296
[PubMed - indexed for MEDLINE]
18.

Computational systems biology and dose-response modeling in relation to new directions in toxicity testing.

Zhang Q, Bhattacharya S, Andersen ME, Conolly RB.

J Toxicol Environ Health B Crit Rev. 2010 Feb;13(2-4):253-76. doi: 10.1080/10937404.2010.483943.

PMID:
20574901
[PubMed - indexed for MEDLINE]
19.

Pattern recognition software and techniques for biological image analysis.

Shamir L, Delaney JD, Orlov N, Eckley DM, Goldberg IG.

PLoS Comput Biol. 2010 Nov 24;6(11):e1000974. doi: 10.1371/journal.pcbi.1000974. Review.

PMID:
21124870
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Fiji: an open-source platform for biological-image analysis.

Schindelin J, Arganda-Carreras I, Frise E, Kaynig V, Longair M, Pietzsch T, Preibisch S, Rueden C, Saalfeld S, Schmid B, Tinevez JY, White DJ, Hartenstein V, Eliceiri K, Tomancak P, Cardona A.

Nat Methods. 2012 Jun 28;9(7):676-82. doi: 10.1038/nmeth.2019.

PMID:
22743772
[PubMed - indexed for MEDLINE]
Free PMC Article
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