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Results: 1 to 20 of 251

1.

BioGateway: a semantic systems biology tool for the life sciences.

Antezana E, Blondé W, Egaña M, Rutherford A, Stevens R, De Baets B, Mironov V, Kuiper M.

BMC Bioinformatics. 2009 Oct 1;10 Suppl 10:S11. doi: 10.1186/1471-2105-10-S10-S11.

PMID:
19796395
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

A journey to Semantic Web query federation in the life sciences.

Cheung KH, Frost HR, Marshall MS, Prud'hommeaux E, Samwald M, Zhao J, Paschke A.

BMC Bioinformatics. 2009 Oct 1;10 Suppl 10:S10. doi: 10.1186/1471-2105-10-S10-S10.

PMID:
19796394
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Life sciences on the Semantic Web: the Neurocommons and beyond.

Ruttenberg A, Rees JA, Samwald M, Marshall MS.

Brief Bioinform. 2009 Mar;10(2):193-204. doi: 10.1093/bib/bbp004. Epub 2009 Mar 12.

PMID:
19282504
[PubMed - indexed for MEDLINE]
Free Article
4.

YeastHub: a semantic web use case for integrating data in the life sciences domain.

Cheung KH, Yip KY, Smith A, Deknikker R, Masiar A, Gerstein M.

Bioinformatics. 2005 Jun;21 Suppl 1:i85-96.

PMID:
15961502
[PubMed - indexed for MEDLINE]
Free Article
5.

An ontology-driven semantic mashup of gene and biological pathway information: application to the domain of nicotine dependence.

Sahoo SS, Bodenreider O, Rutter JL, Skinner KJ, Sheth AP.

J Biomed Inform. 2008 Oct;41(5):752-65. doi: 10.1016/j.jbi.2008.02.006. Epub 2008 Feb 29.

PMID:
18395495
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

A semantic web ontology for small molecules and their biological targets.

Choi J, Davis MJ, Newman AF, Ragan MA.

J Chem Inf Model. 2010 May 24;50(5):732-41. doi: 10.1021/ci900461j.

PMID:
20405959
[PubMed - indexed for MEDLINE]
7.

Reasoning with bio-ontologies: using relational closure rules to enable practical querying.

Blondé W, Mironov V, Venkatesan A, Antezana E, De Baets B, Kuiper M.

Bioinformatics. 2011 Jun 1;27(11):1562-8. doi: 10.1093/bioinformatics/btr164. Epub 2011 Apr 5.

PMID:
21471019
[PubMed - indexed for MEDLINE]
Free Article
8.

AlzPharm: integration of neurodegeneration data using RDF.

Lam HY, Marenco L, Clark T, Gao Y, Kinoshita J, Shepherd G, Miller P, Wu E, Wong GT, Liu N, Crasto C, Morse T, Stephens S, Cheung KH.

BMC Bioinformatics. 2007 May 9;8 Suppl 3:S4.

PMID:
17493287
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Biological knowledge management: the emerging role of the Semantic Web technologies.

Antezana E, Kuiper M, Mironov V.

Brief Bioinform. 2009 Jul;10(4):392-407. doi: 10.1093/bib/bbp024. Epub 2009 May 19. Review.

PMID:
19457869
[PubMed - indexed for MEDLINE]
Free Article
10.

SSWAP: A Simple Semantic Web Architecture and Protocol for semantic web services.

Gessler DD, Schiltz GS, May GD, Avraham S, Town CD, Grant D, Nelson RT.

BMC Bioinformatics. 2009 Sep 23;10:309. doi: 10.1186/1471-2105-10-309.

PMID:
19775460
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Biological data integration using Semantic Web technologies.

Pasquier C.

Biochimie. 2008 Apr;90(4):584-94. doi: 10.1016/j.biochi.2008.02.007. Epub 2008 Feb 21.

PMID:
18294970
[PubMed - indexed for MEDLINE]
12.

Moby and Moby 2: creatures of the deep (web).

Vandervalk BP, McCarthy EL, Wilkinson MD.

Brief Bioinform. 2009 Mar;10(2):114-28. doi: 10.1093/bib/bbn051. Epub 2009 Jan 16.

PMID:
19151099
[PubMed - indexed for MEDLINE]
Free Article
13.

BOWiki: an ontology-based wiki for annotation of data and integration of knowledge in biology.

Hoehndorf R, Bacher J, Backhaus M, Gregorio SE Jr, Loebe F, Prüfer K, Uciteli A, Visagie J, Herre H, Kelso J.

BMC Bioinformatics. 2009 May 6;10 Suppl 5:S5. doi: 10.1186/1471-2105-10-S5-S5.

PMID:
19426462
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

HPD: an online integrated human pathway database enabling systems biology studies.

Chowbina SR, Wu X, Zhang F, Li PM, Pandey R, Kasamsetty HN, Chen JY.

BMC Bioinformatics. 2009 Oct 8;10 Suppl 11:S5. doi: 10.1186/1471-2105-10-S11-S5.

PMID:
19811689
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Towards Semantic e-Science for Traditional Chinese Medicine.

Chen H, Mao Y, Zheng X, Cui M, Feng Y, Deng S, Yin A, Zhou C, Tang J, Jiang X, Wu Z.

BMC Bioinformatics. 2007 May 9;8 Suppl 3:S6. Review.

PMID:
17493289
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

A semantic web approach applied to integrative bioinformatics experimentation: a biological use case with genomics data.

Post LJ, Roos M, Marshall MS, van Driel R, Breit TM.

Bioinformatics. 2007 Nov 15;23(22):3080-7. Epub 2007 Sep 19.

PMID:
17881406
[PubMed - indexed for MEDLINE]
Free Article
17.

A semantic problem solving environment for integrative parasite research: identification of intervention targets for Trypanosoma cruzi.

Parikh PP, Minning TA, Nguyen V, Lalithsena S, Asiaee AH, Sahoo SS, Doshi P, Tarleton R, Sheth AP.

PLoS Negl Trop Dis. 2012 Jan;6(1):e1458. doi: 10.1371/journal.pntd.0001458. Epub 2012 Jan 17.

PMID:
22272365
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

RDFScape: Semantic Web meets systems biology.

Splendiani A.

BMC Bioinformatics. 2008 Apr 25;9 Suppl 4:S6. doi: 10.1186/1471-2105-9-S4-S6.

PMID:
18460179
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

A Semantic Web management model for integrative biomedical informatics.

Deus HF, Stanislaus R, Veiga DF, Behrens C, Wistuba II, Minna JD, Garner HR, Swisher SG, Roth JA, Correa AM, Broom B, Coombes K, Chang A, Vogel LH, Almeida JS.

PLoS One. 2008 Aug 13;3(8):e2946. doi: 10.1371/journal.pone.0002946.

PMID:
18698353
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

A semantic proteomics dashboard (SemPoD) for data management in translational research.

Jayapandian CP, Zhao M, Ewing RM, Zhang GQ, Sahoo SS.

BMC Syst Biol. 2012;6 Suppl 3:S20. doi: 10.1186/1752-0509-6-S3-S20. Epub 2012 Dec 17.

PMID:
23282161
[PubMed - indexed for MEDLINE]
Free PMC Article

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