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Results: 1 to 20 of 69

1.

Image analysis and data normalization procedures are crucial for microarray analyses.

Kadanga AK, Leroux C, Bonnet M, Chauvet S, Meunier B, Cassar-Malek I, Hocquette JF.

Gene Regul Syst Bio. 2008 Mar 17;2:107-12.

PMID:
19787079
[PubMed]
Free PMC Article
2.

Normalization for triple-target microarray experiments.

Martin-Magniette ML, Aubert J, Bar-Hen A, Elftieh S, Magniette F, Renou JP, Daudin JJ.

BMC Bioinformatics. 2008 Apr 28;9:216. doi: 10.1186/1471-2105-9-216.

PMID:
18442385
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

A new non-linear normalization method for reducing variability in DNA microarray experiments.

Workman C, Jensen LJ, Jarmer H, Berka R, Gautier L, Nielser HB, Saxild HH, Nielsen C, Brunak S, Knudsen S.

Genome Biol. 2002 Aug 30;3(9):research0048. Epub 2002 Aug 30.

PMID:
12225587
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Characterizing dye bias in microarray experiments.

Dobbin KK, Kawasaki ES, Petersen DW, Simon RM.

Bioinformatics. 2005 May 15;21(10):2430-7. Epub 2005 Mar 17.

PMID:
15774555
[PubMed - indexed for MEDLINE]
Free Article
5.

Normalization and gene p-value estimation: issues in microarray data processing.

Fundel K, Küffner R, Aigner T, Zimmer R.

Bioinform Biol Insights. 2008 May 28;2:291-305.

PMID:
19812783
[PubMed]
Free PMC Article
6.

Impact of DNA microarray data transformation on gene expression analysis - comparison of two normalization methods.

Schmidt MT, Handschuh L, Zyprych J, Szabelska A, Olejnik-Schmidt AK, Siatkowski I, Figlerowicz M.

Acta Biochim Pol. 2011;58(4):573-80. Epub 2011 Dec 20.

PMID:
22187680
[PubMed - indexed for MEDLINE]
Free Article
7.

Replication, variation and normalisation in microarray experiments.

Altman N.

Appl Bioinformatics. 2005;4(1):33-44.

PMID:
16000011
[PubMed - indexed for MEDLINE]
8.

GP3: GenePix post-processing program for automated analysis of raw microarray data.

Fielden MR, Halgren RG, Dere E, Zacharewski TR.

Bioinformatics. 2002 May;18(5):771-3.

PMID:
12050078
[PubMed - indexed for MEDLINE]
Free Article
9.

Identification of differentially expressed genes and false discovery rate in microarray studies.

Gusnanto A, Calza S, Pawitan Y.

Curr Opin Lipidol. 2007 Apr;18(2):187-93. Review.

PMID:
17353668
[PubMed - indexed for MEDLINE]
10.

Microarray data simulator for improved selection of differentially expressed genes.

Singhal S, Kyvernitis CG, Johnson SW, Kaiser LR, Liebman MN, Albelda SM.

Cancer Biol Ther. 2003 Jul-Aug;2(4):383-91.

PMID:
14508110
[PubMed - indexed for MEDLINE]
Free Article
11.

An adaptive method for cDNA microarray normalization.

Zhao Y, Li MC, Simon R.

BMC Bioinformatics. 2005 Feb 11;6:28.

PMID:
15707486
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Gene ARMADA: an integrated multi-analysis platform for microarray data implemented in MATLAB.

Chatziioannou A, Moulos P, Kolisis FN.

BMC Bioinformatics. 2009 Oct 27;10:354. doi: 10.1186/1471-2105-10-354.

PMID:
19860866
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Accuracy of cDNA microarray methods to detect small gene expression changes induced by neuregulin on breast epithelial cells.

Yao B, Rakhade SN, Li Q, Ahmed S, Krauss R, Draghici S, Loeb JA.

BMC Bioinformatics. 2004 Jul 23;5:99.

PMID:
15272935
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Analysis of cDNA microarray images.

Yang YH, Buckley MJ, Speed TP.

Brief Bioinform. 2001 Dec;2(4):341-9. Review.

PMID:
11808746
[PubMed - indexed for MEDLINE]
Free Article
15.

Significance analysis of microarray for relative quantitation of LC/MS data in proteomics.

Roxas BA, Li Q.

BMC Bioinformatics. 2008 Apr 10;9:187. doi: 10.1186/1471-2105-9-187.

PMID:
18402702
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

MC-normalization: a novel method for dye-normalization of two-channel microarray data.

Landfors M, Fahlén J, Rydén P.

Stat Appl Genet Mol Biol. 2009;8:Article 42. doi: 10.2202/1544-6115.1459. Epub 2009 Oct 1.

PMID:
19799561
[PubMed - indexed for MEDLINE]
17.

Empirical evaluation of data transformations and ranking statistics for microarray analysis.

Qin LX, Kerr KF; Contributing Members of the Toxicogenomics Research Consortium.

Nucleic Acids Res. 2004 Oct 12;32(18):5471-9. Print 2004. Erratum in: Nucleic Acids Res. 2004 Nov 8;32(19):5972. Nucleic Acids Res. 2004 Dec;32(22):6718.

PMID:
15479783
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

A case study on choosing normalization methods and test statistics for two-channel microarray data.

Xie Y, Jeong KS, Pan W, Khodursky A, Carlin BP.

Comp Funct Genomics. 2004;5(5):432-44. doi: 10.1002/cfg.416.

PMID:
18629172
[PubMed]
Free PMC Article
19.

Normalization of microarray data: single-labeled and dual-labeled arrays.

Do JH, Choi DK.

Mol Cells. 2006 Dec 31;22(3):254-61. Review.

PMID:
17202852
[PubMed - indexed for MEDLINE]
Free Article
20.

Clustering microarray data to determine normalization method.

Vendettuoli M, Doyle E, Hofmann H.

Adv Exp Med Biol. 2011;696:145-53. doi: 10.1007/978-1-4419-7046-6_15.

PMID:
21431555
[PubMed - indexed for MEDLINE]

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