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Results: 1 to 20 of 112

1.

Bayesian phylogeography finds its roots.

Lemey P, Rambaut A, Drummond AJ, Suchard MA.

PLoS Comput Biol. 2009 Sep;5(9):e1000520. doi: 10.1371/journal.pcbi.1000520. Epub 2009 Sep 25.

PMID:
19779555
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Phylogeography takes a relaxed random walk in continuous space and time.

Lemey P, Rambaut A, Welch JJ, Suchard MA.

Mol Biol Evol. 2010 Aug;27(8):1877-85. doi: 10.1093/molbev/msq067. Epub 2010 Mar 4.

PMID:
20203288
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Phylogeography of rabies virus isolated from dogs in Brazil between 1985 and 2006.

Carnieli P Jr, de Novaes Oliveira R, Macedo CI, Castilho JG.

Arch Virol. 2011 Jun;156(6):1007-12. doi: 10.1007/s00705-011-0942-y. Epub 2011 Feb 13.

PMID:
21327782
[PubMed - indexed for MEDLINE]
4.

SPREAD: spatial phylogenetic reconstruction of evolutionary dynamics.

Bielejec F, Rambaut A, Suchard MA, Lemey P.

Bioinformatics. 2011 Oct 15;27(20):2910-2. doi: 10.1093/bioinformatics/btr481. Epub 2011 Sep 11.

PMID:
21911333
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Phylogeographic analysis of rabies viruses in the Philippines.

Tohma K, Saito M, Kamigaki T, Tuason LT, Demetria CS, Orbina JR, Manalo DL, Miranda ME, Noguchi A, Inoue S, Suzuki A, Quiambao BP, Oshitani H.

Infect Genet Evol. 2014 Apr;23:86-94. doi: 10.1016/j.meegid.2014.01.026. Epub 2014 Feb 7.

PMID:
24512808
[PubMed - indexed for MEDLINE]
Free Article
6.

The origin and phylogeography of dog rabies virus.

Bourhy H, Reynes JM, Dunham EJ, Dacheux L, Larrous F, Huong VT, Xu G, Yan J, Miranda ME, Holmes EC.

J Gen Virol. 2008 Nov;89(Pt 11):2673-81. doi: 10.1099/vir.0.2008/003913-0.

PMID:
18931062
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

A statistical phylogeography of influenza A H5N1.

Wallace RG, Hodac H, Lathrop RH, Fitch WM.

Proc Natl Acad Sci U S A. 2007 Mar 13;104(11):4473-8. Epub 2007 Mar 7.

PMID:
17360548
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Unifying the spatial population dynamics and molecular evolution of epidemic rabies virus.

Real LA, Henderson JC, Biek R, Snaman J, Jack TL, Childs JE, Stahl E, Waller L, Tinline R, Nadin-Davis S.

Proc Natl Acad Sci U S A. 2005 Aug 23;102(34):12107-11. Epub 2005 Aug 15.

PMID:
16103358
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Evolutionary history of rabies in Ghana.

Hayman DT, Johnson N, Horton DL, Hedge J, Wakeley PR, Banyard AC, Zhang S, Alhassan A, Fooks AR.

PLoS Negl Trop Dis. 2011 Apr 5;5(4):e1001. doi: 10.1371/journal.pntd.0001001.

PMID:
21483707
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Molecular evolutionary signatures reveal the role of host ecological dynamics in viral disease emergence and spread.

Duke-Sylvester SM, Biek R, Real LA.

Philos Trans R Soc Lond B Biol Sci. 2013 Feb 4;368(1614):20120194. doi: 10.1098/rstb.2012.0194. Print 2013 Mar 19.

PMID:
23382419
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Phylogeographic dispersion and diversification of rabies virus lineages associated with dogs and crab-eating foxes (Cerdocyon thous) in Brazil.

Carnieli P Jr, Ruthner Batista HB, de Novaes Oliveira R, Castilho JG, Vieira LF.

Arch Virol. 2013 Nov;158(11):2307-13. doi: 10.1007/s00705-013-1755-y. Epub 2013 Jun 8.

PMID:
23749047
[PubMed - indexed for MEDLINE]
12.

Bayesian estimation of ancestral character states on phylogenies.

Pagel M, Meade A, Barker D.

Syst Biol. 2004 Oct;53(5):673-84.

PMID:
15545248
[PubMed - indexed for MEDLINE]
13.

Phylodynamics and human-mediated dispersal of a zoonotic virus.

Talbi C, Lemey P, Suchard MA, Abdelatif E, Elharrak M, Nourlil J, Faouzi A, Echevarría JE, Vazquez Morón S, Rambaut A, Campiz N, Tatem AJ, Holmes EC, Bourhy H.

PLoS Pathog. 2010 Oct 28;6(10):e1001166. doi: 10.1371/journal.ppat.1001166. Erratum in: PLoS Pathog. 2011;7(1). doi: 10.1371/annotation/66c3b26f-7b78-4412-96d0-c960b8d74b50. Jalal, Nourlil [corrected to Nourlil, Jalal].

PMID:
21060816
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Influenza A H5N1 immigration is filtered out at some international borders.

Wallace RG, Fitch WM.

PLoS One. 2008 Feb 27;3(2):e1697. doi: 10.1371/journal.pone.0001697.

PMID:
18301773
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

The phylogeography of human viruses.

Holmes EC.

Mol Ecol. 2004 Apr;13(4):745-56. Review.

PMID:
15012753
[PubMed - indexed for MEDLINE]
16.

Modeling the association of space, time, and host species with variation of the HA, NA, and NS genes of H5N1 highly pathogenic avian influenza viruses isolated from birds in Romania in 2005-2007.

Alkhamis M, Perez A, Batey N, Howard W, Baillie G, Watson S, Franz S, Focosi-Snyman R, Onita I, Cioranu R, Turcitu M, Kellam P, Brown IH, Breed AC.

Avian Dis. 2013 Sep;57(3):612-21.

PMID:
24283126
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Phylodynamics of H5N1 avian influenza virus in Indonesia.

Lam TT, Hon CC, Lemey P, Pybus OG, Shi M, Tun HM, Li J, Jiang J, Holmes EC, Leung FC.

Mol Ecol. 2012 Jun;21(12):3062-77. doi: 10.1111/j.1365-294X.2012.05577.x. Epub 2012 May 11.

PMID:
22574738
[PubMed - indexed for MEDLINE]
18.

Phylogenetic analysis and victim contact tracing of rabies virus from humans and dogs in Bali, Indonesia.

Mahardika GN, Dibia N, Budayanti NS, Susilawathi NM, Subrata K, Darwinata AE, Wignall FS, Richt JA, Valdivia-Granda WA, Sudewi AA.

Epidemiol Infect. 2014 Jun;142(6):1146-54. doi: 10.1017/S0950268813002021. Epub 2013 Aug 19.

PMID:
23958065
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Rates of viral evolution are linked to host geography in bat rabies.

Streicker DG, Lemey P, Velasco-Villa A, Rupprecht CE.

PLoS Pathog. 2012;8(5):e1002720. doi: 10.1371/journal.ppat.1002720. Epub 2012 May 17.

PMID:
22615575
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Molecular epidemiology of circulating highly pathogenic avian influenza (H5N1) virus in chickens, in Bangladesh, 2007-2010.

Ahmed SS, Themudo GE, Christensen JP, Biswas PK, Giasuddin M, Samad MA, Toft N, Ersbøll AK.

Vaccine. 2012 Dec 7;30(51):7381-90. doi: 10.1016/j.vaccine.2012.09.081. Epub 2012 Oct 11.

PMID:
23063840
[PubMed - indexed for MEDLINE]

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