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Results: 1 to 20 of 86

Similar articles for PubMed (Select 19759213)

1.

Multiplex primer prediction software for divergent targets.

Gardner SN, Hiddessen AL, Williams PL, Hara C, Wagner MC, Colston BW Jr.

Nucleic Acids Res. 2009 Oct;37(19):6291-304. doi: 10.1093/nar/gkp659. Epub 2009 Sep 16.

2.

Skip the alignment: degenerate, multiplex primer and probe design using K-mer matching instead of alignments.

Hysom DA, Naraghi-Arani P, Elsheikh M, Carrillo AC, Williams PL, Gardner SN.

PLoS One. 2012;7(4):e34560. doi: 10.1371/journal.pone.0034560. Epub 2012 Apr 2.

3.

Amplicon: software for designing PCR primers on aligned DNA sequences.

Jarman SN.

Bioinformatics. 2004 Jul 10;20(10):1644-5. Epub 2004 Feb 12.

4.

MultiPrimer: software for multiplex primer design.

Lee C, Wu JS, Shiue YL, Liang HL.

Appl Bioinformatics. 2006;5(2):99-109.

PMID:
16722774
5.

Universal primer set for the full-length amplification of all influenza A viruses.

Hoffmann E, Stech J, Guan Y, Webster RG, Perez DR.

Arch Virol. 2001 Dec;146(12):2275-89.

PMID:
11811679
6.

Greene SCPrimer: a rapid comprehensive tool for designing degenerate primers from multiple sequence alignments.

Jabado OJ, Palacios G, Kapoor V, Hui J, Renwick N, Zhai J, Briese T, Lipkin WI.

Nucleic Acids Res. 2006;34(22):6605-11. Epub 2006 Nov 28.

7.

Automated degenerate PCR primer design for high-throughput sequencing improves efficiency of viral sequencing.

Li K, Shrivastava S, Brownley A, Katzel D, Bera J, Nguyen AT, Thovarai V, Halpin R, Stockwell TB.

Virol J. 2012 Nov 6;9:261. doi: 10.1186/1743-422X-9-261.

8.

AutoDimer: a screening tool for primer-dimer and hairpin structures.

Vallone PM, Butler JM.

Biotechniques. 2004 Aug;37(2):226-31.

PMID:
15335214
9.

MPprimer: a program for reliable multiplex PCR primer design.

Shen Z, Qu W, Wang W, Lu Y, Wu Y, Li Z, Hang X, Wang X, Zhao D, Zhang C.

BMC Bioinformatics. 2010 Mar 18;11:143. doi: 10.1186/1471-2105-11-143.

10.

Methods for detection and differentiation of existing and new crinivirus species through multiplex and degenerate primer RT-PCR.

Wintermantel WM, Hladky LL.

J Virol Methods. 2010 Dec;170(1-2):106-14. doi: 10.1016/j.jviromet.2010.09.008. Epub 2010 Sep 15.

PMID:
20833203
11.

OLIGO 7 primer analysis software.

Rychlik W.

Methods Mol Biol. 2007;402:35-60. Review.

PMID:
17951789
12.

Integrated minimum-set primers and unique probe design algorithms for differential detection on symptom-related pathogens.

Huang YC, Chang CF, Chan CH, Yeh TJ, Chang YC, Chen CC, Kao CY.

Bioinformatics. 2005 Dec 15;21(24):4330-7. Epub 2005 Oct 25.

13.

Multiplex RT-nested PCR differentiation of gill-associated virus (Australia) from yellow head virus (Thailand) of Penaeus monodon.

Cowley JA, Cadogan LC, Wongteerasupaya C, Hodgson RA, Boonsaeng V, Walker PJ.

J Virol Methods. 2004 Apr;117(1):49-59.

PMID:
15019259
15.

BatchPrimer3: a high throughput web application for PCR and sequencing primer design.

You FM, Huo N, Gu YQ, Luo MC, Ma Y, Hane D, Lazo GR, Dvorak J, Anderson OD.

BMC Bioinformatics. 2008 May 29;9:253. doi: 10.1186/1471-2105-9-253.

16.

Simulate_PCR for amplicon prediction and annotation from multiplex, degenerate primers and probes.

Gardner SN, Slezak T.

BMC Bioinformatics. 2014 Jul 9;15:237. doi: 10.1186/1471-2105-15-237.

17.

Design of microarray probes for virus identification and detection of emerging viruses at the genus level.

Chou CC, Lee TT, Chen CH, Hsiao HY, Lin YL, Ho MS, Yang PC, Peck K.

BMC Bioinformatics. 2006 Apr 28;7:232.

18.

Sequence analysis of C18L gene of buffalopox virus: PCR strategy for specific detection and differentiation of buffalopox from orthopoxviruses.

Singh RK, Balamurugan V, Hosamani M, Kallesh DJ, Bhanuprakash V.

J Virol Methods. 2008 Dec;154(1-2):146-53. doi: 10.1016/j.jviromet.2008.08.009. Epub 2008 Sep 30.

PMID:
18790707
19.

Multiplex degenerate primer design for targeted whole genome amplification of many viral genomes.

Gardner SN, Jaing CJ, Elsheikh MM, Peña J, Hysom DA, Borucki MK.

Adv Bioinformatics. 2014;2014:101894. doi: 10.1155/2014/101894. Epub 2014 Aug 3.

20.

Application of universal primers for identification of Foot-and-mouth disease virus and Swine vesicular disease virus by PCR and PCR-ELISA.

Lomakina NF, Fallacara F, Pacciarini M, Amadori M, Lomakin AI, Timina AM, Shcherbakova LO, Drygin VV.

Arch Virol. 2004 Jun;149(6):1155-70. Epub 2004 Feb 12.

PMID:
15168202
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