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Items: 1 to 20 of 112

1.

CCHMM_PROF: a HMM-based coiled-coil predictor with evolutionary information.

Bartoli L, Fariselli P, Krogh A, Casadio R.

Bioinformatics. 2009 Nov 1;25(21):2757-63. doi: 10.1093/bioinformatics/btp539. Epub 2009 Sep 10.

2.

A computationally guided protein-interaction screen uncovers coiled-coil interactions involved in vesicular trafficking.

Zhang H, Chen J, Wang Y, Peng L, Dong X, Lu Y, Keating AE, Jiang T.

J Mol Biol. 2009 Sep 11;392(1):228-41. doi: 10.1016/j.jmb.2009.07.006. Epub 2009 Jul 8.

PMID:
19591838
3.

Socket: a program for identifying and analysing coiled-coil motifs within protein structures.

Walshaw J, Woolfson DN.

J Mol Biol. 2001 Apr 13;307(5):1427-50.

PMID:
11292353
4.
5.

AutoSCOP: automated prediction of SCOP classifications using unique pattern-class mappings.

Gewehr JE, Hintermair V, Zimmer R.

Bioinformatics. 2007 May 15;23(10):1203-10. Epub 2007 Mar 22.

6.

Fast model-based protein homology detection without alignment.

Hochreiter S, Heusel M, Obermayer K.

Bioinformatics. 2007 Jul 15;23(14):1728-36. Epub 2007 May 8.

7.

Sequence comparisons of intermediate filament chains: evidence of a unique functional/structural role for coiled-coil segment 1A and linker L1.

Smith TA, Strelkov SV, Burkhard P, Aebi U, Parry DA.

J Struct Biol. 2002 Jan-Feb;137(1-2):128-45.

PMID:
12064940
8.

BaCelLo: a balanced subcellular localization predictor.

Pierleoni A, Martelli PL, Fariselli P, Casadio R.

Bioinformatics. 2006 Jul 15;22(14):e408-16.

9.
10.

Hidden Markov models for detecting remote protein homologies.

Karplus K, Barrett C, Hughey R.

Bioinformatics. 1998;14(10):846-56.

11.

Kernel methods for predicting protein-protein interactions.

Ben-Hur A, Noble WS.

Bioinformatics. 2005 Jun;21 Suppl 1:i38-46.

12.

Prediction of disulfide connectivity in proteins.

Fariselli P, Casadio R.

Bioinformatics. 2001 Oct;17(10):957-64.

13.

Protein classification based on text document classification techniques.

Cheng BY, Carbonell JG, Klein-Seetharaman J.

Proteins. 2005 Mar 1;58(4):955-70.

PMID:
15645499
14.

Using inferred residue contacts to distinguish between correct and incorrect protein models.

Miller CS, Eisenberg D.

Bioinformatics. 2008 Jul 15;24(14):1575-82. doi: 10.1093/bioinformatics/btn248. Epub 2008 May 29.

15.

N-terminal N-myristoylation of proteins: prediction of substrate proteins from amino acid sequence.

Maurer-Stroh S, Eisenhaber B, Eisenhaber F.

J Mol Biol. 2002 Apr 5;317(4):541-57.

PMID:
11955008
16.

MemLoci: predicting subcellular localization of membrane proteins in eukaryotes.

Pierleoni A, Martelli PL, Casadio R.

Bioinformatics. 2011 May 1;27(9):1224-30. doi: 10.1093/bioinformatics/btr108. Epub 2011 Mar 2.

17.

SCORER 2.0: an algorithm for distinguishing parallel dimeric and trimeric coiled-coil sequences.

Armstrong CT, Vincent TL, Green PJ, Woolfson DN.

Bioinformatics. 2011 Jul 15;27(14):1908-14. doi: 10.1093/bioinformatics/btr299. Epub 2011 May 16.

18.

The evolution and structure prediction of coiled coils across all genomes.

Rackham OJ, Madera M, Armstrong CT, Vincent TL, Woolfson DN, Gough J.

J Mol Biol. 2010 Oct 29;403(3):480-93. doi: 10.1016/j.jmb.2010.08.032. Epub 2010 Sep 9.

PMID:
20813113
19.

Masking residues using context-specific evolutionary conservation significantly improves short linear motif discovery.

Davey NE, Shields DC, Edwards RJ.

Bioinformatics. 2009 Feb 15;25(4):443-50. doi: 10.1093/bioinformatics/btn664. Epub 2009 Jan 9.

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