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Results: 1 to 20 of 80

1.

Comparison of DNA binding across protein superfamilies.

Contreras-Moreira B, Sancho J, Angarica VE.

Proteins. 2010 Jan;78(1):52-62. doi: 10.1002/prot.22525.

PMID:
19731374
[PubMed - indexed for MEDLINE]
2.

DNA-induced alpha-helix capping in conserved linker sequences is a determinant of binding affinity in Cys(2)-His(2) zinc fingers.

Laity JH, Dyson HJ, Wright PE.

J Mol Biol. 2000 Jan 28;295(4):719-27.

PMID:
10656784
[PubMed - indexed for MEDLINE]
3.

Assessment of major and minor groove DNA interactions by the zinc fingers of Xenopus transcription factor IIIA.

McBryant SJ, Gedulin B, Clemens KR, Wright PE, Gottesfeld JM.

Nucleic Acids Res. 1996 Jul 1;24(13):2567-74.

PMID:
8692697
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Analysis of zinc fingers optimized via phage display: evaluating the utility of a recognition code.

Wolfe SA, Greisman HA, Ramm EI, Pabo CO.

J Mol Biol. 1999 Feb 5;285(5):1917-34.

PMID:
9925775
[PubMed - indexed for MEDLINE]
5.

Rearrangement of side-chains in a Zif268 mutant highlights the complexities of zinc finger-DNA recognition.

Miller JC, Pabo CO.

J Mol Biol. 2001 Oct 19;313(2):309-15.

PMID:
11800559
[PubMed - indexed for MEDLINE]
6.

Reconstitution of the KRAB-KAP-1 repressor complex: a model system for defining the molecular anatomy of RING-B box-coiled-coil domain-mediated protein-protein interactions.

Peng H, Begg GE, Schultz DC, Friedman JR, Jensen DE, Speicher DW, Rauscher FJ 3rd.

J Mol Biol. 2000 Feb 4;295(5):1139-62.

PMID:
10653693
[PubMed - indexed for MEDLINE]
7.

Solution structure of the first three zinc fingers of TFIIIA bound to the cognate DNA sequence: determinants of affinity and sequence specificity.

Wuttke DS, Foster MP, Case DA, Gottesfeld JM, Wright PE.

J Mol Biol. 1997 Oct 17;273(1):183-206.

PMID:
9367756
[PubMed - indexed for MEDLINE]
8.

Insights into the molecular recognition of the 5'-GNN-3' family of DNA sequences by zinc finger domains.

Dreier B, Segal DJ, Barbas CF 3rd.

J Mol Biol. 2000 Nov 3;303(4):489-502.

PMID:
11054286
[PubMed - indexed for MEDLINE]
9.

Solution structures of two CCHC zinc fingers from the FOG family protein U-shaped that mediate protein-protein interactions.

Liew CK, Kowalski K, Fox AH, Newton A, Sharpe BK, Crossley M, Mackay JP.

Structure. 2000 Nov 15;8(11):1157-66.

PMID:
11080638
[PubMed - indexed for MEDLINE]
Free Article
10.

Geometric analysis and comparison of protein-DNA interfaces: why is there no simple code for recognition?

Pabo CO, Nekludova L.

J Mol Biol. 2000 Aug 18;301(3):597-624.

PMID:
10966773
[PubMed - indexed for MEDLINE]
11.

Mutational analysis and NMR spectroscopy of quail cysteine and glycine-rich protein CRP2 reveal an intrinsic segmental flexibility of LIM domains.

Kloiber K, Weiskirchen R, Kräutler B, Bister K, Konrat R.

J Mol Biol. 1999 Oct 1;292(4):893-908.

PMID:
10525413
[PubMed - indexed for MEDLINE]
12.

Target-sequence recognition by separate-type Cys2/His2 zinc finger proteins in plants.

Takatsuji H, Matsumoto T.

J Biol Chem. 1996 Sep 20;271(38):23368-73.

PMID:
8798540
[PubMed - indexed for MEDLINE]
Free Article
13.

Prediction of TF target sites based on atomistic models of protein-DNA complexes.

Angarica VE, Pérez AG, Vasconcelos AT, Collado-Vides J, Contreras-Moreira B.

BMC Bioinformatics. 2008 Oct 16;9:436. doi: 10.1186/1471-2105-9-436.

PMID:
18922190
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Self-association of the erythroid transcription factor GATA-1 mediated by its zinc finger domains.

Crossley M, Merika M, Orkin SH.

Mol Cell Biol. 1995 May;15(5):2448-56.

PMID:
7739529
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Cys2/His2 zinc-finger protein family of petunia: evolution and general mechanism of target-sequence recognition.

Kubo Ki, Sakamoto A, Kobayashi A, Rybka Z, Kanno Y, Nakagawa H, Takatsuji H.

Nucleic Acids Res. 1998 Jan 15;26(2):608-15.

PMID:
9421523
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Beyond the "recognition code": structures of two Cys2His2 zinc finger/TATA box complexes.

Wolfe SA, Grant RA, Elrod-Erickson M, Pabo CO.

Structure. 2001 Aug;9(8):717-23.

PMID:
11587646
[PubMed - indexed for MEDLINE]
Free Article
17.

Artificial zinc finger peptides: creation, DNA recognition, and gene regulation.

Nagaoka M, Sugiura Y.

J Inorg Biochem. 2000 Nov;82(1-4):57-63. Review.

PMID:
11132639
[PubMed - indexed for MEDLINE]
18.

Redesigning the DNA-binding specificity of a zinc finger protein: a data base-guided approach.

Desjarlais JR, Berg JM.

Proteins. 1992 Feb;12(2):101-4. Erratum in: Proteins. 1992 Jul;13(3):272.

PMID:
1603798
[PubMed - indexed for MEDLINE]
19.

Towards an understanding of protein-DNA recognition.

Rhodes D, Schwabe JW, Chapman L, Fairall L.

Philos Trans R Soc Lond B Biol Sci. 1996 Apr 29;351(1339):501-9. Review.

PMID:
8735272
[PubMed - indexed for MEDLINE]
20.

ReadOut: structure-based calculation of direct and indirect readout energies and specificities for protein-DNA recognition.

Ahmad S, Kono H, Araúzo-Bravo MJ, Sarai A.

Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W124-7.

PMID:
16844974
[PubMed - indexed for MEDLINE]
Free PMC Article

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