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Results: 1 to 20 of 101

1.

Comparative genomics of chondrichthyan Hoxa clusters.

Mulley JF, Zhong YF, Holland PW.

BMC Evol Biol. 2009 Sep 2;9:218. doi: 10.1186/1471-2148-9-218.

PMID:
19725973
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Molecular evolution of the HoxA cluster in the three major gnathostome lineages.

Chiu CH, Amemiya C, Dewar K, Kim CB, Ruddle FH, Wagner GP.

Proc Natl Acad Sci U S A. 2002 Apr 16;99(8):5492-7. Epub 2002 Apr 9.

PMID:
11943847
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Elephant shark sequence reveals unique insights into the evolutionary history of vertebrate genes: A comparative analysis of the protocadherin cluster.

Yu WP, Rajasegaran V, Yew K, Loh WL, Tay BH, Amemiya CT, Brenner S, Venkatesh B.

Proc Natl Acad Sci U S A. 2008 Mar 11;105(10):3819-24. doi: 10.1073/pnas.0800398105. Epub 2008 Mar 4.

PMID:
18319338
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Survey sequencing and comparative analysis of the elephant shark (Callorhinchus milii) genome.

Venkatesh B, Kirkness EF, Loh YH, Halpern AL, Lee AP, Johnson J, Dandona N, Viswanathan LD, Tay A, Venter JC, Strausberg RL, Brenner S.

PLoS Biol. 2007 Apr;5(4):e101.

PMID:
17407382
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Elephant shark (Callorhinchus milii) provides insights into the evolution of Hox gene clusters in gnathostomes.

Ravi V, Lam K, Tay BH, Tay A, Brenner S, Venkatesh B.

Proc Natl Acad Sci U S A. 2009 Sep 22;106(38):16327-32. doi: 10.1073/pnas.0907914106. Epub 2009 Sep 3.

PMID:
19805301
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Hox cluster genomics in the horn shark, Heterodontus francisci.

Kim CB, Amemiya C, Bailey W, Kawasaki K, Mezey J, Miller W, Minoshima S, Shimizu N, Wagner G, Ruddle F.

Proc Natl Acad Sci U S A. 2000 Feb 15;97(4):1655-60.

PMID:
10677514
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Comparative genomics of ParaHox clusters of teleost fishes: gene cluster breakup and the retention of gene sets following whole genome duplications.

Siegel N, Hoegg S, Salzburger W, Braasch I, Meyer A.

BMC Genomics. 2007 Sep 6;8:312.

PMID:
17822543
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Ancient noncoding elements conserved in the human genome.

Venkatesh B, Kirkness EF, Loh YH, Halpern AL, Lee AP, Johnson J, Dandona N, Viswanathan LD, Tay A, Venter JC, Strausberg RL, Brenner S.

Science. 2006 Dec 22;314(5807):1892. Erratum in: Science. 2007 Feb 9;315(5813):766.

PMID:
17185593
[PubMed - indexed for MEDLINE]
Free Article
9.

Sequencing and analysis of full-length cDNAs, 5'-ESTs and 3'-ESTs from a cartilaginous fish, the elephant shark (Callorhinchus milii).

Tan YY, Kodzius R, Tay BH, Tay A, Brenner S, Venkatesh B.

PLoS One. 2012;7(10):e47174. doi: 10.1371/journal.pone.0047174. Epub 2012 Oct 8.

PMID:
23056606
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Bichir HoxA cluster sequence reveals surprising trends in ray-finned fish genomic evolution.

Chiu CH, Dewar K, Wagner GP, Takahashi K, Ruddle F, Ledje C, Bartsch P, Scemama JL, Stellwag E, Fried C, Prohaska SJ, Stadler PF, Amemiya CT.

Genome Res. 2004 Jan;14(1):11-7.

PMID:
14707166
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Divergence of conserved non-coding sequences: rate estimates and relative rate tests.

Wagner GP, Fried C, Prohaska SJ, Stadler PF.

Mol Biol Evol. 2004 Nov;21(11):2116-21. Epub 2004 Jul 28.

PMID:
15282332
[PubMed - indexed for MEDLINE]
Free Article
12.

Characterization of the neurohypophysial hormone gene loci in elephant shark and the Japanese lamprey: origin of the vertebrate neurohypophysial hormone genes.

Gwee PC, Tay BH, Brenner S, Venkatesh B.

BMC Evol Biol. 2009 Feb 26;9:47. doi: 10.1186/1471-2148-9-47.

PMID:
19243634
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Surveying phylogenetic footprints in large gene clusters: applications to Hox cluster duplications.

Prohaska SJ, Fried C, Flamm C, Wagner GP, Stadler PF.

Mol Phylogenet Evol. 2004 May;31(2):581-604.

PMID:
15062796
[PubMed - indexed for MEDLINE]
14.

Into the blue: gene duplication and loss underlie color vision adaptations in a deep-sea chimaera, the elephant shark Callorhinchus milii.

Davies WL, Carvalho LS, Tay BH, Brenner S, Hunt DM, Venkatesh B.

Genome Res. 2009 Mar;19(3):415-26. doi: 10.1101/gr.084509.108. Epub 2009 Feb 4.

PMID:
19196633
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Evolution of Hoxa-11 in lineages phylogenetically positioned along the fin-limb transition.

Chiu CH, Nonaka D, Xue L, Amemiya CT, Wagner GP.

Mol Phylogenet Evol. 2000 Nov;17(2):305-16.

PMID:
11083943
[PubMed - indexed for MEDLINE]
16.

Phylogenomic analyses of KCNA gene clusters in vertebrates: why do gene clusters stay intact?

Hoegg S, Meyer A.

BMC Evol Biol. 2007 Aug 15;7:139.

PMID:
17697377
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Parathyroid hormone gene family in a cartilaginous fish, the elephant shark (Callorhinchus milii).

Liu Y, Ibrahim AS, Tay BH, Richardson SJ, Bell J, Walker TI, Brenner S, Venkatesh B, Danks JA.

J Bone Miner Res. 2010 Dec;25(12):2613-23. doi: 10.1002/jbmr.178. Epub 2010 Jul 7. Erratum in: J Bone Miner Res. 2011 Feb;26(2):439.

PMID:
20614475
[PubMed - indexed for MEDLINE]
18.

Molecular evolution of duplicated ray finned fish HoxA clusters: increased synonymous substitution rate and asymmetrical co-divergence of coding and non-coding sequences.

Wagner GP, Takahashi K, Lynch V, Prohaska SJ, Fried C, Stadler PF, Amemiya C.

J Mol Evol. 2005 May;60(5):665-76.

PMID:
15983874
[PubMed - indexed for MEDLINE]
19.

RNA expression in a cartilaginous fish cell line reveals ancient 3' noncoding regions highly conserved in vertebrates.

Forest D, Nishikawa R, Kobayashi H, Parton A, Bayne CJ, Barnes DW.

Proc Natl Acad Sci U S A. 2007 Jan 23;104(4):1224-9. Epub 2007 Jan 16.

PMID:
17227856
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Evolution of conserved non-coding sequences within the vertebrate Hox clusters through the two-round whole genome duplications revealed by phylogenetic footprinting analysis.

Matsunami M, Sumiyama K, Saitou N.

J Mol Evol. 2010 Dec;71(5-6):427-36. doi: 10.1007/s00239-010-9396-1. Epub 2010 Oct 28.

PMID:
20981416
[PubMed - indexed for MEDLINE]
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