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Results: 1 to 20 of 176

1.

CLUE-TIPS, clustering methods for pattern analysis of LC-MS data.

Akella LM, Rejtar T, Orazine C, Hincapie M, Hancock WS.

J Proteome Res. 2009 Oct;8(10):4732-42. doi: 10.1021/pr900427q.

PMID:
19725534
[PubMed - indexed for MEDLINE]
2.

Corra: Computational framework and tools for LC-MS discovery and targeted mass spectrometry-based proteomics.

Brusniak MY, Bodenmiller B, Campbell D, Cooke K, Eddes J, Garbutt A, Lau H, Letarte S, Mueller LN, Sharma V, Vitek O, Zhang N, Aebersold R, Watts JD.

BMC Bioinformatics. 2008 Dec 16;9:542. doi: 10.1186/1471-2105-9-542.

PMID:
19087345
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

A software suite for the generation and comparison of peptide arrays from sets of data collected by liquid chromatography-mass spectrometry.

Li XJ, Yi EC, Kemp CJ, Zhang H, Aebersold R.

Mol Cell Proteomics. 2005 Sep;4(9):1328-40. Epub 2005 Jul 26.

PMID:
16048906
[PubMed - indexed for MEDLINE]
Free Article
4.

Biomarker discovery in low-grade breast cancer using isobaric stable isotope tags and two-dimensional liquid chromatography-tandem mass spectrometry (iTRAQ-2DLC-MS/MS) based quantitative proteomic analysis.

Bouchal P, Roumeliotis T, Hrstka R, Nenutil R, Vojtesek B, Garbis SD.

J Proteome Res. 2009 Jan;8(1):362-73. doi: 10.1021/pr800622b.

PMID:
19053527
[PubMed - indexed for MEDLINE]
5.

SuperHirn - a novel tool for high resolution LC-MS-based peptide/protein profiling.

Mueller LN, Rinner O, Schmidt A, Letarte S, Bodenmiller B, Brusniak MY, Vitek O, Aebersold R, Müller M.

Proteomics. 2007 Oct;7(19):3470-80.

PMID:
17726677
[PubMed - indexed for MEDLINE]
6.

Mascot file parsing and quantification (MFPaQ), a new software to parse, validate, and quantify proteomics data generated by ICAT and SILAC mass spectrometric analyses: application to the proteomics study of membrane proteins from primary human endothelial cells.

Bouyssié D, Gonzalez de Peredo A, Mouton E, Albigot R, Roussel L, Ortega N, Cayrol C, Burlet-Schiltz O, Girard JP, Monsarrat B.

Mol Cell Proteomics. 2007 Sep;6(9):1621-37. Epub 2007 May 28.

PMID:
17533220
[PubMed - indexed for MEDLINE]
Free Article
7.

Reproducibility of LC-MS-based protein identification.

Berg M, Parbel A, Pettersen H, Fenyö D, Björkesten L.

J Exp Bot. 2006;57(7):1509-14. Epub 2006 Mar 21.

PMID:
16551682
[PubMed - indexed for MEDLINE]
Free Article
8.

Design and analysis of quantitative differential proteomics investigations using LC-MS technology.

Bukhman YV, Dharsee M, Ewing R, Chu P, Topaloglou T, Le Bihan T, Goh T, Duewel H, Stewart II, Wisniewski JR, Ng NF.

J Bioinform Comput Biol. 2008 Feb;6(1):107-23.

PMID:
18324749
[PubMed - indexed for MEDLINE]
9.

Quality control metrics for LC-MS feature detection tools demonstrated on Saccharomyces cerevisiae proteomic profiles.

Piening BD, Wang P, Bangur CS, Whiteaker J, Zhang H, Feng LC, Keane JF, Eng JK, Tang H, Prakash A, McIntosh MW, Paulovich A.

J Proteome Res. 2006 Jul;5(7):1527-34.

PMID:
16823959
[PubMed - indexed for MEDLINE]
10.

A geometric approach for the alignment of liquid chromatography-mass spectrometry data.

Lange E, Gröpl C, Schulz-Trieglaff O, Leinenbach A, Huber C, Reinert K.

Bioinformatics. 2007 Jul 1;23(13):i273-81.

PMID:
17646306
[PubMed - indexed for MEDLINE]
Free Article
11.

Targeted proteomics of low-level proteins in human plasma by LC/MSn: using human growth hormone as a model system.

Wu SL, Amato H, Biringer R, Choudhary G, Shieh P, Hancock WS.

J Proteome Res. 2002 Sep-Oct;1(5):459-65.

PMID:
12645918
[PubMed - indexed for MEDLINE]
12.

Visual analysis of gel-free proteome data.

Linsen L, Löcherbach J, Berth M, Becher D, Bernhardt J.

IEEE Trans Vis Comput Graph. 2006 Jul-Aug;12(4):497-508.

PMID:
16805259
[PubMed - indexed for MEDLINE]
13.

Informatics platform for global proteomic profiling and biomarker discovery using liquid chromatography-tandem mass spectrometry.

Radulovic D, Jelveh S, Ryu S, Hamilton TG, Foss E, Mao Y, Emili A.

Mol Cell Proteomics. 2004 Oct;3(10):984-97. Epub 2004 Jul 21.

PMID:
15269249
[PubMed - indexed for MEDLINE]
Free Article
14.

Proteomic analysis of ubiquitinated proteins from human MCF-7 breast cancer cells by immunoaffinity purification and mass spectrometry.

Vasilescu J, Smith JC, Ethier M, Figeys D.

J Proteome Res. 2005 Nov-Dec;4(6):2192-200.

PMID:
16335966
[PubMed - indexed for MEDLINE]
15.

Multidimensional chromatography coupled to mass spectrometry in analysing complex proteomics samples.

Horvatovich P, Hoekman B, Govorukhina N, Bischoff R.

J Sep Sci. 2010 Jun;33(10):1421-37. doi: 10.1002/jssc.201000050. Review.

PMID:
20486207
[PubMed - indexed for MEDLINE]
16.
17.

Label-free protein quantification using LC-coupled ion trap or FT mass spectrometry: Reproducibility, linearity, and application with complex proteomes.

Wang G, Wu WW, Zeng W, Chou CL, Shen RF.

J Proteome Res. 2006 May;5(5):1214-23.

PMID:
16674111
[PubMed - indexed for MEDLINE]
18.

Reversed-phase high-performance liquid chromatographic prefractionation of immunodepleted human serum proteins to enhance mass spectrometry identification of lower-abundant proteins.

Martosella J, Zolotarjova N, Liu H, Nicol G, Boyes BE.

J Proteome Res. 2005 Sep-Oct;4(5):1522-37.

PMID:
16212403
[PubMed - indexed for MEDLINE]
19.

LC-MS data analysis for differential protein expression detection.

Varghese RS, Ressom HW.

Methods Mol Biol. 2011;694:139-50. doi: 10.1007/978-1-60761-977-2_10.

PMID:
21082433
[PubMed - indexed for MEDLINE]
20.

Fully automated 96-well liquid-liquid extraction for analysis of biological samples by liquid chromatography with tandem mass spectrometry.

Peng SX, Branch TM, King SL.

Anal Chem. 2001 Feb 1;73(3):708-14.

PMID:
11217789
[PubMed - indexed for MEDLINE]

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