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Items: 1 to 20 of 89

1.

Analysis of array-CGH data using the R and Bioconductor software suite.

Hofmann WA, Weigmann A, Tauscher M, Skawran B, Focken T, Buurman R, Wingen LU, Schlegelberger B, Steinemann D.

Comp Funct Genomics. 2009:201325. doi: 10.1155/2009/201325. Epub 2009 Aug 19.

2.

CGHPRO -- a comprehensive data analysis tool for array CGH.

Chen W, Erdogan F, Ropers HH, Lenzner S, Ullmann R.

BMC Bioinformatics. 2005 Apr 5;6:85.

3.

SeeGH--a software tool for visualization of whole genome array comparative genomic hybridization data.

Chi B, DeLeeuw RJ, Coe BP, MacAulay C, Lam WL.

BMC Bioinformatics. 2004 Feb 9;5:13.

4.

Combined array-comparative genomic hybridization and single-nucleotide polymorphism-loss of heterozygosity analysis reveals complex genetic alterations in cervical cancer.

Kloth JN, Oosting J, van Wezel T, Szuhai K, Knijnenburg J, Gorter A, Kenter GG, Fleuren GJ, Jordanova ES.

BMC Genomics. 2007 Feb 20;8:53.

5.

Apply innovative technologies to explore cancer genome.

Shih IeM, Wang TL.

Curr Opin Oncol. 2005 Jan;17(1):33-8. Review.

PMID:
15608510
6.

Analysis of array CGH data: from signal ratio to gain and loss of DNA regions.

Hupé P, Stransky N, Thiery JP, Radvanyi F, Barillot E.

Bioinformatics. 2004 Dec 12;20(18):3413-22. Epub 2004 Sep 20.

7.

High-resolution analysis of DNA copy number alterations in colorectal cancer by array-based comparative genomic hybridization.

Nakao K, Mehta KR, Fridlyand J, Moore DH, Jain AN, Lafuente A, Wiencke JW, Terdiman JP, Waldman FM.

Carcinogenesis. 2004 Aug;25(8):1345-57. Epub 2004 Mar 4.

8.

High resolution analysis of DNA copy number variation using comparative genomic hybridization to microarrays.

Pinkel D, Segraves R, Sudar D, Clark S, Poole I, Kowbel D, Collins C, Kuo WL, Chen C, Zhai Y, Dairkee SH, Ljung BM, Gray JW, Albertson DG.

Nat Genet. 1998 Oct;20(2):207-11.

PMID:
9771718
9.

Development and implementation of an analysis tool for array-based comparative genomic hybridization.

Kreuz M, Rosolowski M, Berger H, Schwaenen C, Wessendorf S, Loeffler M, Hasenclever D.

Methods Inf Med. 2007;46(5):608-13.

PMID:
17938787
10.

SIGMA: a system for integrative genomic microarray analysis of cancer genomes.

Chari R, Lockwood WW, Coe BP, Chu A, Macey D, Thomson A, Davies JJ, MacAulay C, Lam WL.

BMC Genomics. 2006 Dec 27;7:324.

11.

Integrated analysis of copy number alteration and RNA expression profiles of cancer using a high-resolution whole-genome oligonucleotide array.

Jung SH, Shin SH, Yim SH, Choi HS, Lee SH, Chung YJ.

Exp Mol Med. 2009 Jul 31;41(7):462-70. doi: 10.3858/emm.2009.41.7.051.

12.

Genome-wide profiling of oral squamous cell carcinoma by array-based comparative genomic hybridization.

Sparano A, Quesnelle KM, Kumar MS, Wang Y, Sylvester AJ, Feldman M, Sewell DA, Weinstein GS, Brose MS.

Laryngoscope. 2006 May;116(5):735-41.

PMID:
16652080
13.

Detection of submicroscopic constitutional chromosome aberrations in clinical diagnostics: a validation of the practical performance of different array platforms.

Zhang ZF, Ruivenkamp C, Staaf J, Zhu H, Barbaro M, Petillo D, Khoo SK, Borg A, Fan YS, Schoumans J.

Eur J Hum Genet. 2008 Jul;16(7):786-92. doi: 10.1038/ejhg.2008.14. Epub 2008 Feb 20.

14.

Visualization-based discovery and analysis of genomic aberrations in microarray data.

Myers CL, Chen X, Troyanskaya OG.

BMC Bioinformatics. 2005 Jun 13;6:146.

15.

CGcgh: a tool for molecular karyotyping using DNA microarray-based comparative genomic hybridization (array-CGH).

Lee YS, Chao A, Chao AS, Chang SD, Chen CH, Wu WM, Wang TH, Wang HS.

J Biomed Sci. 2008 Nov;15(6):687-96. doi: 10.1007/s11373-008-9275-6. Epub 2008 Aug 19.

PMID:
18712492
16.
17.

Using expression arrays for copy number detection: an example from E. coli.

Skvortsov D, Abdueva D, Stitzer ME, Finkel SE, Tavaré S.

BMC Bioinformatics. 2007 Jun 14;8:203.

18.

Exon array CGH: detection of copy-number changes at the resolution of individual exons in the human genome.

Dhami P, Coffey AJ, Abbs S, Vermeesch JR, Dumanski JP, Woodward KJ, Andrews RM, Langford C, Vetrie D.

Am J Hum Genet. 2005 May;76(5):750-62. Epub 2005 Mar 8.

19.

VAMP: visualization and analysis of array-CGH, transcriptome and other molecular profiles.

La Rosa P, Viara E, Hupé P, Pierron G, Liva S, Neuvial P, Brito I, Lair S, Servant N, Robine N, Manié E, Brennetot C, Janoueix-Lerosey I, Raynal V, Gruel N, Rouveirol C, Stransky N, Stern MH, Delattre O, Aurias A, Radvanyi F, Barillot E.

Bioinformatics. 2006 Sep 1;22(17):2066-73. Epub 2006 Jul 4.

20.

CAPweb: a bioinformatics CGH array Analysis Platform.

Liva S, Hupé P, Neuvial P, Brito I, Viara E, La Rosa P, Barillot E.

Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W477-81.

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