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Results: 1 to 20 of 102

1.

The genus burkholderia: analysis of 56 genomic sequences.

Ussery DW, Kiil K, Lagesen K, Sicheritz-Pontén T, Bohlin J, Wassenaar TM.

Genome Dyn. 2009;6:140-57. doi: 10.1159/000235768. Epub 2009 Aug 19.

PMID:
19696499
[PubMed - in process]
2.
3.

Genomes of three tomato pathogens within the Ralstonia solanacearum species complex reveal significant evolutionary divergence.

Remenant B, Coupat-Goutaland B, Guidot A, Cellier G, Wicker E, Allen C, Fegan M, Pruvost O, Elbaz M, Calteau A, Salvignol G, Mornico D, Mangenot S, Barbe V, Médigue C, Prior P.

BMC Genomics. 2010 Jun 15;11:379. doi: 10.1186/1471-2164-11-379.

PMID:
20550686
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Exploring the HME and HAE1 efflux systems in the genus Burkholderia.

Perrin E, Fondi M, Papaleo MC, Maida I, Buroni S, Pasca MR, Riccardi G, Fani R.

BMC Evol Biol. 2010 Jun 3;10:164. doi: 10.1186/1471-2148-10-164.

PMID:
20525265
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Defining the Pseudomonas genus: where do we draw the line with Azotobacter?

Özen AI, Ussery DW.

Microb Ecol. 2012 Feb;63(2):239-48. doi: 10.1007/s00248-011-9914-8. Epub 2011 Aug 3.

PMID:
21811795
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Genomic comparisons of Brucella spp. and closely related bacteria using base compositional and proteome based methods.

Bohlin J, Snipen L, Cloeckaert A, Lagesen K, Ussery D, Kristoffersen AB, Godfroid J.

BMC Evol Biol. 2010 Aug 13;10:249. doi: 10.1186/1471-2148-10-249.

PMID:
20707916
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Comparative genomics of the bacterial genus Listeria: Genome evolution is characterized by limited gene acquisition and limited gene loss.

den Bakker HC, Cummings CA, Ferreira V, Vatta P, Orsi RH, Degoricija L, Barker M, Petrauskene O, Furtado MR, Wiedmann M.

BMC Genomics. 2010 Dec 2;11:688. doi: 10.1186/1471-2164-11-688.

PMID:
21126366
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

The Salmonella enterica pan-genome.

Jacobsen A, Hendriksen RS, Aaresturp FM, Ussery DW, Friis C.

Microb Ecol. 2011 Oct;62(3):487-504. doi: 10.1007/s00248-011-9880-1. Epub 2011 Jun 4. Review.

PMID:
21643699
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Genomic characterization of Campylobacter jejuni strain M1.

Friis C, Wassenaar TM, Javed MA, Snipen L, Lagesen K, Hallin PF, Newell DG, Toszeghy M, Ridley A, Manning G, Ussery DW.

PLoS One. 2010 Aug 26;5(8):e12253. doi: 10.1371/journal.pone.0012253.

PMID:
20865039
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Reassessment of the Listeria monocytogenes pan-genome reveals dynamic integration hotspots and mobile genetic elements as major components of the accessory genome.

Kuenne C, Billion A, Mraheil MA, Strittmatter A, Daniel R, Goesmann A, Barbuddhe S, Hain T, Chakraborty T.

BMC Genomics. 2013 Jan 22;14:47. doi: 10.1186/1471-2164-14-47.

PMID:
23339658
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Diversity of the parB and repA genes of the Burkholderia cepacia complex and their utility for rapid identification of Burkholderia cenocepacia.

Drevinek P, Baldwin A, Dowson CG, Mahenthiralingam E.

BMC Microbiol. 2008 Mar 7;8:44. doi: 10.1186/1471-2180-8-44.

PMID:
18328098
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Genetic and phenotypic diversity in Burkholderia: contributions by prophage and phage-like elements.

Ronning CM, Losada L, Brinkac L, Inman J, Ulrich RL, Schell M, Nierman WC, Deshazer D.

BMC Microbiol. 2010 Jul 28;10:202. doi: 10.1186/1471-2180-10-202.

PMID:
20667135
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Pan-genome sequence analysis using Panseq: an online tool for the rapid analysis of core and accessory genomic regions.

Laing C, Buchanan C, Taboada EN, Zhang Y, Kropinski A, Villegas A, Thomas JE, Gannon VP.

BMC Bioinformatics. 2010 Sep 15;11:461. doi: 10.1186/1471-2105-11-461.

PMID:
20843356
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Bioinformatic genome comparisons for taxonomic and phylogenetic assignments using Aeromonas as a test case.

Colston SM, Fullmer MS, Beka L, Lamy B, Gogarten JP, Graf J.

MBio. 2014 Nov 18;5(6):e02136. doi: 10.1128/mBio.02136-14.

PMID:
25406383
[PubMed - in process]
Free PMC Article
15.

Genetic diversity of Burkholderia (Proteobacteria) species from the Caatinga and Atlantic rainforest biomes in Bahia, Brazil.

Santini AC, Santos HR, Gross E, Corrêa RX.

Genet Mol Res. 2013 Mar 11;12(1):655-64. doi: 10.4238/2013.March.11.13.

PMID:
23546947
[PubMed - indexed for MEDLINE]
Free Article
16.

Comparative genomics of Bifidobacterium, Lactobacillus and related probiotic genera.

Lukjancenko O, Ussery DW, Wassenaar TM.

Microb Ecol. 2012 Apr;63(3):651-73. doi: 10.1007/s00248-011-9948-y. Epub 2011 Oct 27. Review.

PMID:
22031452
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Genome BLAST distance phylogenies inferred from whole plastid and whole mitochondrion genome sequences.

Auch AF, Henz SR, Holland BR, Göker M.

BMC Bioinformatics. 2006 Jul 19;7:350.

PMID:
16854218
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Genome trees constructed using five different approaches suggest new major bacterial clades.

Wolf YI, Rogozin IB, Grishin NV, Tatusov RL, Koonin EV.

BMC Evol Biol. 2001 Oct 20;1:8.

PMID:
11734060
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Comparison of 61 sequenced Escherichia coli genomes.

Lukjancenko O, Wassenaar TM, Ussery DW.

Microb Ecol. 2010 Nov;60(4):708-20. doi: 10.1007/s00248-010-9717-3. Epub 2010 Jul 11. Review.

PMID:
20623278
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Genome-wide identification and mapping of variable sequences in the genomes of Burkholderia mallei and Burkholderia pseudomallei.

Fushan A, Monastyrskaya G, Abaev I, Kostina M, Filyukova O, Pecherskih E, Sverdlov E.

Res Microbiol. 2005 Mar;156(2):278-88. Epub 2004 Dec 1.

PMID:
15748995
[PubMed - indexed for MEDLINE]
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