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Similar articles for PubMed (Select 19667081)

1.

Knowledge-guided inference of domain-domain interactions from incomplete protein-protein interaction networks.

Liu M, Chen XW, Jothi R.

Bioinformatics. 2009 Oct 1;25(19):2492-9. doi: 10.1093/bioinformatics/btp480. Epub 2009 Aug 10.

2.

DT-Web: a web-based application for drug-target interaction and drug combination prediction through domain-tuned network-based inference.

Alaimo S, Bonnici V, Cancemi D, Ferro A, Giugno R, Pulvirenti A.

BMC Syst Biol. 2015;9 Suppl 3:S4. doi: 10.1186/1752-0509-9-S3-S4. Epub 2015 Jun 1.

3.

GECluster: a novel protein complex prediction method.

Su L, Liu G, Wang H, Tian Y, Zhou Z, Han L, Yan L.

Biotechnol Biotechnol Equip. 2014 Jul 4;28(4):753-761. Epub 2014 Oct 17.

4.

A method to pinpoint undiscovered links in genetic and protein networks.

Ancusa V, Broasca L.

Stud Health Technol Inform. 2015;210:771-5.

PMID:
25991258
5.

Taming Oncogenic Signaling at Protein Interfaces: Challenges and Opportunities.

Cavga AD, Karahan N, Keskin O, Gursoy A.

Curr Top Med Chem. 2015 May 18. [Epub ahead of print]

PMID:
25986691
6.

On the Bayesian Derivation of a Treatment-based Cancer Ontology.

Gao M, Warner J, Yang P, Alterovitz G.

AMIA Jt Summits Transl Sci Proc. 2014 Apr 7;2014:209-17. eCollection 2014.

7.

Predicting peptide-mediated interactions on a genome-wide scale.

Chen TS, Petrey D, Garzon JI, Honig B.

PLoS Comput Biol. 2015 May 4;11(5):e1004248. doi: 10.1371/journal.pcbi.1004248. eCollection 2015 May.

8.

Essential protein identification based on essential protein-protein interaction prediction by Integrated Edge Weights.

Jiang Y, Wang Y, Pang W, Chen L, Sun H, Liang Y, Blanzieri E.

Methods. 2015 Apr 16. pii: S1046-2023(15)00159-0. doi: 10.1016/j.ymeth.2015.04.013. [Epub ahead of print]

PMID:
25892709
9.
10.

A Two-Stage Geometric Method for Pruning Unreliable Links in Protein-Protein Networks.

Zhu L, Deng SP, Huang S.

IEEE Trans Nanobioscience. 2015 Apr 8. [Epub ahead of print]

PMID:
25861086
11.

Proteins involved in more domain types tend to be more essential.

Chen L, Cheng Y, Li M, Wang J.

Int J Bioinform Res Appl. 2015;11(2):91-110. doi: 10.1504/IJBRA.2015.068086.

PMID:
25786790
12.

K-core decomposition of a protein domain co-occurrence network reveals lower cancer mutation rates for interior cores.

Emerson AI, Andrews S, Ahmed I, Azis TK, Malek JA.

J Clin Bioinforma. 2015 Mar 3;5:1. doi: 10.1186/s13336-015-0016-6. eCollection 2015.

13.

PPI-IRO: a two-stage method for protein-protein interaction extraction based on interaction relation ontology.

Li CX, Chen P, Wang RJ, Wang XJ, Su YR, Li J.

Int J Data Min Bioinform. 2014;10(1):98-119.

PMID:
25757257
14.

Network based prediction of protein localisation using diffusion kernel.

Mondal A, Hu J.

Int J Data Min Bioinform. 2014;9(4):386-400.

PMID:
25757246
15.

Protein interaction networks associated with cardiovascular disease and cancer: exploring the effect of bias on shared network properties.

Dobson RJ, Munroe PB, Caulfield MJ, Saqi MA.

Int J Data Min Bioinform. 2014;9(4):339-57.

PMID:
25757244
16.

IIIDB: a database for isoform-isoform interactions and isoform network modules.

Tseng YT, Li W, Chen CH, Zhang S, Chen JJ, Zhou X, Liu CC.

BMC Genomics. 2015;16 Suppl 2:S10. doi: 10.1186/1471-2164-16-S2-S10. Epub 2015 Jan 21.

17.

Data Imputation in Epistatic MAPs by Network-Guided Matrix Completion.

Žitnik M, Zupan B.

J Comput Biol. 2015 Jun;22(6):595-608. doi: 10.1089/cmb.2014.0158. Epub 2015 Feb 6.

PMID:
25658751
18.
19.

Knowledge-based modeling of peptides at protein interfaces: PiPreD.

Oliva B, Fernandez-Fuentes N.

Bioinformatics. 2015 May 1;31(9):1405-10. doi: 10.1093/bioinformatics/btu838. Epub 2014 Dec 23.

PMID:
25540186
20.

Efficient prediction of human protein-protein interactions at a global scale.

Schoenrock A, Samanfar B, Pitre S, Hooshyar M, Jin K, Phillips CA, Wang H, Phanse S, Omidi K, Gui Y, Alamgir M, Wong A, Barrenäs F, Babu M, Benson M, Langston MA, Green JR, Dehne F, Golshani A.

BMC Bioinformatics. 2014 Dec 10;15:383. doi: 10.1186/s12859-014-0383-1.

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