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Results: 1 to 20 of 79

1.

Resolving deconvolution ambiguity in gene alternative splicing.

She Y, Hubbell E, Wang H.

BMC Bioinformatics. 2009 Aug 4;10:237. doi: 10.1186/1471-2105-10-237.

PMID:
19653895
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Gene structure-based splice variant deconvolution using a microarray platform.

Wang H, Hubbell E, Hu JS, Mei G, Cline M, Lu G, Clark T, Siani-Rose MA, Ares M, Kulp DC, Haussler D.

Bioinformatics. 2003;19 Suppl 1:i315-22.

PMID:
12855476
[PubMed - indexed for MEDLINE]
Free Article
3.

Predicting splice variant from DNA chip expression data.

Hu GK, Madore SJ, Moldover B, Jatkoe T, Balaban D, Thomas J, Wang Y.

Genome Res. 2001 Jul;11(7):1237-45.

PMID:
11435406
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Detecting alternative gene structures from spliced ESTs: a computational approach.

Bonizzoni P, Mauri G, Pesole G, Picardi E, Pirola Y, Rizzi R.

J Comput Biol. 2009 Jan;16(1):43-66. doi: 10.1089/cmb.2008.0028.

PMID:
19119993
[PubMed - indexed for MEDLINE]
5.

Bioinformatics analysis of alternative splicing.

Lee C, Wang Q.

Brief Bioinform. 2005 Mar;6(1):23-33. Review.

PMID:
15826354
[PubMed - indexed for MEDLINE]
Free Article
6.

ANOSVA: a statistical method for detecting splice variation from expression data.

Cline MS, Blume J, Cawley S, Clark TA, Hu JS, Lu G, Salomonis N, Wang H, Williams A.

Bioinformatics. 2005 Jun;21 Suppl 1:i107-15.

PMID:
15961447
[PubMed - indexed for MEDLINE]
Free Article
7.

Alternative splicing and differential gene expression in colon cancer detected by a whole genome exon array.

Gardina PJ, Clark TA, Shimada B, Staples MK, Yang Q, Veitch J, Schweitzer A, Awad T, Sugnet C, Dee S, Davies C, Williams A, Turpaz Y.

BMC Genomics. 2006 Dec 27;7:325.

PMID:
17192196
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Towards reliable isoform quantification using RNA-SEQ data.

Howard BE, Heber S.

BMC Bioinformatics. 2010 Apr 29;11 Suppl 3:S6. doi: 10.1186/1471-2105-11-S3-S6.

PMID:
20438653
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Extent and diversity of human alternative splicing established by complementary database annotation and microarray analysis.

Bingham JL, Carrigan PE, Miller LJ, Srinivasan S.

OMICS. 2008 Mar;12(1):83-92. doi: 10.1089/omi.2007.0041.

PMID:
18266558
[PubMed - indexed for MEDLINE]
10.

Splicy: a web-based tool for the prediction of possible alternative splicing events from Affymetrix probeset data.

Rambaldi D, Felice B, Praz V, Bucher P, Cittaro D, Guffanti A.

BMC Bioinformatics. 2007 Mar 8;8 Suppl 1:S17.

PMID:
17430561
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Probe-level estimation improves the detection of differential splicing in Affymetrix exon array studies.

Laajala E, Aittokallio T, Lahesmaa R, Elo LL.

Genome Biol. 2009;10(7):R77. doi: 10.1186/gb-2009-10-7-r77. Epub 2009 Jul 16.

PMID:
19607685
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Gene structure prediction and alternative splicing analysis using genomically aligned ESTs.

Kan Z, Rouchka EC, Gish WR, States DJ.

Genome Res. 2001 May;11(5):889-900.

PMID:
11337482
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

A hierarchical Bayesian model for comparing transcriptomes at the individual transcript isoform level.

Zheng S, Chen L.

Nucleic Acids Res. 2009 Jun;37(10):e75. doi: 10.1093/nar/gkp282. Epub 2009 May 5.

PMID:
19417075
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Identification and expression analysis of three novel splice variants of protein kinase A catalytic β subunit gene in the mouse using combinatorial in silico and molecular biology approaches.

Banday AR, Azim S, Tabish M.

FEBS J. 2012 Feb;279(4):572-85. doi: 10.1111/j.1742-4658.2011.08446.x. Epub 2012 Jan 9.

PMID:
22151102
[PubMed - indexed for MEDLINE]
15.

Comparison of Affymetrix Gene Array with the Exon Array shows potential application for detection of transcript isoform variation.

Ha KCh, Coulombe-Huntington J, Majewski J.

BMC Genomics. 2009 Nov 12;10:519. doi: 10.1186/1471-2164-10-519.

PMID:
19909511
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Calculation of reliable transcript levels of annotated genes on the basis of multiple probe-sets in Affymetrix microarrays.

Jaksik R, Polańska J, Herok R, Rzeszowska-Wolny J.

Acta Biochim Pol. 2009;56(2):271-7. Epub 2009 May 12.

PMID:
19436837
[PubMed - indexed for MEDLINE]
Free Article
17.

A tractable probabilistic model for Affymetrix probe-level analysis across multiple chips.

Liu X, Milo M, Lawrence ND, Rattray M.

Bioinformatics. 2005 Sep 15;21(18):3637-44. Epub 2005 Jul 14.

PMID:
16020470
[PubMed - indexed for MEDLINE]
Free Article
18.

Efficient prediction of alternative splice forms using protein domain homology.

Hiller M, Backofen R, Heymann S, Busch A, Glaesser TM, Freytag JC.

In Silico Biol. 2004;4(2):195-208.

PMID:
15107023
[PubMed - indexed for MEDLINE]
19.

Regularized estimation of large-scale gene association networks using graphical Gaussian models.

Krämer N, Schäfer J, Boulesteix AL.

BMC Bioinformatics. 2009 Nov 24;10:384. doi: 10.1186/1471-2105-10-384.

PMID:
19930695
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Evaluation of methods for oligonucleotide array data via quantitative real-time PCR.

Qin LX, Beyer RP, Hudson FN, Linford NJ, Morris DE, Kerr KF.

BMC Bioinformatics. 2006 Jan 17;7:23.

PMID:
16417622
[PubMed - indexed for MEDLINE]
Free PMC Article

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