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Results: 1 to 20 of 1682

1.

Improving homology models for protein-ligand binding sites.

Kauffman C, Rangwala H, Karypis G.

Comput Syst Bioinformatics Conf. 2008;7:211-22.

PMID:
19642282
[PubMed - indexed for MEDLINE]
Free Article
2.

Detection of 3D atomic similarities and their use in the discrimination of small molecule protein-binding sites.

Najmanovich R, Kurbatova N, Thornton J.

Bioinformatics. 2008 Aug 15;24(16):i105-11. doi: 10.1093/bioinformatics/btn263.

PMID:
18689810
[PubMed - indexed for MEDLINE]
Free Article
3.

Fold recognition by predicted alignment accuracy.

Xu J.

IEEE/ACM Trans Comput Biol Bioinform. 2005 Apr-Jun;2(2):157-65.

PMID:
17044180
[PubMed - indexed for MEDLINE]
4.

Q-SiteFinder: an energy-based method for the prediction of protein-ligand binding sites.

Laurie AT, Jackson RM.

Bioinformatics. 2005 May 1;21(9):1908-16. Epub 2005 Feb 8.

PMID:
15701681
[PubMed - indexed for MEDLINE]
Free Article
5.

Modeling protein loops with knowledge-based prediction of sequence-structure alignment.

Peng HP, Yang AS.

Bioinformatics. 2007 Nov 1;23(21):2836-42. Epub 2007 Sep 7.

PMID:
17827204
[PubMed - indexed for MEDLINE]
Free Article
6.

Sequence based residue depth prediction using evolutionary information and predicted secondary structure.

Zhang H, Zhang T, Chen K, Shen S, Ruan J, Kurgan L.

BMC Bioinformatics. 2008 Sep 20;9:388. doi: 10.1186/1471-2105-9-388.

PMID:
18803867
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Application of protein structure alignments to iterated hidden Markov model protocols for structure prediction.

Scheeff ED, Bourne PE.

BMC Bioinformatics. 2006 Sep 14;7:410.

PMID:
16970830
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Orthogonal kernel machine for the prediction of functional sites in proteins.

Yang ZR.

IEEE Trans Syst Man Cybern B Cybern. 2005 Feb;35(1):100-6.

PMID:
15719937
[PubMed - indexed for MEDLINE]
9.

Protein backbone angle prediction with machine learning approaches.

Kuang R, Leslie CS, Yang AS.

Bioinformatics. 2004 Jul 10;20(10):1612-21. Epub 2004 Feb 26.

PMID:
14988121
[PubMed - indexed for MEDLINE]
Free Article
10.

Predicting residue-wise contact orders in proteins by support vector regression.

Song J, Burrage K.

BMC Bioinformatics. 2006 Oct 3;7:425.

PMID:
17014735
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Prediction of Ras-effector interactions using position energy matrices.

Kiel C, Serrano L.

Bioinformatics. 2007 Sep 1;23(17):2226-30. Epub 2007 Jun 28.

PMID:
17599936
[PubMed - indexed for MEDLINE]
Free Article
12.

Prediction of loop regions in protein sequence.

Dovidchenko NV, Bogatyreva NS, Galzitskaya OV.

J Bioinform Comput Biol. 2008 Oct;6(5):1035-47.

PMID:
18942165
[PubMed - indexed for MEDLINE]
13.

Support Vector Machine-based classification of protein folds using the structural properties of amino acid residues and amino acid residue pairs.

Shamim MT, Anwaruddin M, Nagarajaram HA.

Bioinformatics. 2007 Dec 15;23(24):3320-7. Epub 2007 Nov 7.

PMID:
17989092
[PubMed - indexed for MEDLINE]
Free Article
14.

Fast and accurate multi-class protein fold recognition with spatial sample kernels.

Kuksa P, Huang PH, Pavlovic V.

Comput Syst Bioinformatics Conf. 2008;7:133-43.

PMID:
19642275
[PubMed - indexed for MEDLINE]
Free Article
15.

Molecular modeling study of the mechanism of ligand binding to human melatonin receptors.

Voronkov AE, Ivanov AA, Baskin II, Palyulin VA, Zefirov NS.

Dokl Biochem Biophys. 2005 Jul-Aug;403:284-8. No abstract available.

PMID:
16229143
[PubMed - indexed for MEDLINE]
16.

Rapid knot detection and application to protein structure prediction.

Khatib F, Weirauch MT, Rohl CA.

Bioinformatics. 2006 Jul 15;22(14):e252-9.

PMID:
16873480
[PubMed - indexed for MEDLINE]
Free Article
17.

Cysteine separations profiles on protein sequences infer disulfide connectivity.

Zhao E, Liu HL, Tsai CH, Tsai HK, Chan CH, Kao CY.

Bioinformatics. 2005 Apr 15;21(8):1415-20. Epub 2004 Dec 7.

PMID:
15585533
[PubMed - indexed for MEDLINE]
Free Article
18.

fRMSDPred: predicting local RMSD between structural fragments using sequence information.

Rangwala H, Karypis G.

Comput Syst Bioinformatics Conf. 2007;6:311-22.

PMID:
17951834
[PubMed - indexed for MEDLINE]
Free Article
19.

Predicting and improving the protein sequence alignment quality by support vector regression.

Lee M, Jeong CS, Kim D.

BMC Bioinformatics. 2007 Dec 3;8:471.

PMID:
18053160
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Relating destabilizing regions to known functional sites in proteins.

Dessailly BH, Lensink MF, Wodak SJ.

BMC Bioinformatics. 2007 Apr 30;8:141.

PMID:
17470296
[PubMed - indexed for MEDLINE]
Free PMC Article

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