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Items: 1 to 20 of 96

1.

Why are cellular switches Boolean? General conditions for multistable genetic circuits.

Macía J, Widder S, Solé R.

J Theor Biol. 2009 Nov 7;261(1):126-35. doi: 10.1016/j.jtbi.2009.07.019. Epub 2009 Jul 24.

PMID:
19632240
2.

Multistable decision switches for flexible control of epigenetic differentiation.

Guantes R, Poyatos JF.

PLoS Comput Biol. 2008 Nov;4(11):e1000235. doi: 10.1371/journal.pcbi.1000235. Epub 2008 Nov 28.

3.

Monomeric bistability and the role of autoloops in gene regulation.

Widder S, Macía J, Solé R.

PLoS One. 2009;4(4):e5399. doi: 10.1371/journal.pone.0005399. Epub 2009 Apr 30.

4.

Higher order Boolean networks as models of cell state dynamics.

Markert EK, Baas N, Levine AJ, Vazquez A.

J Theor Biol. 2010 Jun 7;264(3):945-51. doi: 10.1016/j.jtbi.2010.03.015. Epub 2010 Mar 18.

PMID:
20303985
5.

Engineering input/output nodes in prokaryotic regulatory circuits.

de Las Heras A, Carreño CA, Martínez-García E, de Lorenzo V.

FEMS Microbiol Rev. 2010 Sep;34(5):842-65. doi: 10.1111/j.1574-6976.2010.00238.x. Epub 2010 Jun 7. Review.

6.

Mammalian synthetic biology: engineering of sophisticated gene networks.

Greber D, Fussenegger M.

J Biotechnol. 2007 Jul 15;130(4):329-45. Epub 2007 May 24. Review.

PMID:
17602777
7.

Simulation study in Probabilistic Boolean Network models for genetic regulatory networks.

Zhang SQ, Ching WK, Ng MK, Akutsu T.

Int J Data Min Bioinform. 2007;1(3):217-40.

PMID:
18399072
8.

On multistability of delayed genetic regulatory networks with multivariable regulation functions.

Pan W, Wang Z, Gao H, Li Y, Du M.

Math Biosci. 2010 Nov;228(1):100-9. doi: 10.1016/j.mbs.2010.08.012. Epub 2010 Sep 9.

PMID:
20816865
9.

Synthesizing a novel genetic sequential logic circuit: a push-on push-off switch.

Lou C, Liu X, Ni M, Huang Y, Huang Q, Huang L, Jiang L, Lu D, Wang M, Liu C, Chen D, Chen C, Chen X, Yang L, Ma H, Chen J, Ouyang Q.

Mol Syst Biol. 2010;6:350. doi: 10.1038/msb.2010.2. Epub 2010 Mar 9.

10.

Construction of a genetic toggle switch in Escherichia coli.

Gardner TS, Cantor CR, Collins JJ.

Nature. 2000 Jan 20;403(6767):339-42.

PMID:
10659857
11.

Predicting genetic regulatory response using classification.

Middendorf M, Kundaje A, Wiggins C, Freund Y, Leslie C.

Bioinformatics. 2004 Aug 4;20 Suppl 1:i232-40.

12.

[Progress in research of genetic circuits].

Wang W, Chen Z.

Sheng Wu Yi Xue Gong Cheng Xue Za Zhi. 2007 Apr;24(2):460-2. Review. Chinese.

PMID:
17591282
13.

Hysteresis vs. graded responses: the connections make all the difference.

Ninfa AJ, Mayo AE.

Sci STKE. 2004 May 4;2004(232):pe20. Review.

PMID:
15138328
14.

Hub genes with positive feedbacks function as master switches in developmental gene regulatory networks.

Seo CH, Kim JR, Kim MS, Cho KH.

Bioinformatics. 2009 Aug 1;25(15):1898-904. doi: 10.1093/bioinformatics/btp316. Epub 2009 May 13.

15.

Coupling oscillations and switches in genetic networks.

Gonze D.

Biosystems. 2010 Jan;99(1):60-9. doi: 10.1016/j.biosystems.2009.08.009. Epub 2009 Sep 6.

PMID:
19735694
16.
17.

Growing genetic regulatory networks from seed genes.

Hashimoto RF, Kim S, Shmulevich I, Zhang W, Bittner ML, Dougherty ER.

Bioinformatics. 2004 May 22;20(8):1241-7. Epub 2004 Feb 10.

18.

Biological signal processing with a genetic toggle switch.

Hillenbrand P, Fritz G, Gerland U.

PLoS One. 2013 Jul 16;8(7):e68345. doi: 10.1371/journal.pone.0068345. Print 2013.

19.

Multistable switches and their role in cellular differentiation networks.

Ghaffarizadeh A, Flann NS, Podgorski GJ.

BMC Bioinformatics. 2014;15 Suppl 7:S7. doi: 10.1186/1471-2105-15-S7-S7. Epub 2014 May 28.

20.

Signal propagation in nonlinear stochastic gene regulatory networks.

Achimescu S, Lipan O.

Syst Biol (Stevenage). 2006 May;153(3):120-34.

PMID:
16984086
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