Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Results: 1 to 20 of 204

1.

Amino acid architecture that influences dNTP insertion efficiency in Y-family DNA polymerase V of E. coli.

Seo KY, Yin J, Donthamsetti P, Chandani S, Lee CH, Loechler EL.

J Mol Biol. 2009 Sep 18;392(2):270-82. doi: 10.1016/j.jmb.2009.07.016. Epub 2009 Jul 14.

PMID:
19607844
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Homology modeling of four Y-family, lesion-bypass DNA polymerases: the case that E. coli Pol IV and human Pol kappa are orthologs, and E. coli Pol V and human Pol eta are orthologs.

Lee CH, Chandani S, Loechler EL.

J Mol Graph Model. 2006 Sep;25(1):87-102. Epub 2006 Jan 4.

PMID:
16386932
[PubMed - indexed for MEDLINE]
3.

Y-Family DNA polymerases may use two different dNTP shapes for insertion: a hypothesis and its implications.

Chandani S, Loechler EL.

J Mol Graph Model. 2009 Apr;27(7):759-69. doi: 10.1016/j.jmgm.2008.11.003. Epub 2008 Nov 8.

PMID:
19188081
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Mirror image stereoisomers of the major benzo[a]pyrene N2-dG adduct are bypassed by different lesion-bypass DNA polymerases in E. coli.

Seo KY, Nagalingam A, Miri S, Yin J, Chandani S, Kolbanovskiy A, Shastry A, Loechler EL.

DNA Repair (Amst). 2006 Apr 8;5(4):515-22. Epub 2006 Feb 17.

PMID:
16483853
[PubMed - indexed for MEDLINE]
5.

Molecular modeling benzo[a]pyrene N2-dG adducts in the two overlapping active sites of the Y-family DNA polymerase Dpo4.

Chandani S, Loechler EL.

J Mol Graph Model. 2007 Jan;25(5):658-70. Epub 2006 May 9.

PMID:
16782374
[PubMed - indexed for MEDLINE]
6.

Architecture of y-family DNA polymerases relevant to translesion DNA synthesis as revealed in structural and molecular modeling studies.

Chandani S, Jacobs C, Loechler EL.

J Nucleic Acids. 2010 Sep 16;2010. pii: 784081. doi: 10.4061/2010/784081.

PMID:
20936174
[PubMed]
Free PMC Article
7.

Structural model of the Y-Family DNA polymerase V/RecA mutasome.

Chandani S, Loechler EL.

J Mol Graph Model. 2013 Feb;39:133-44. doi: 10.1016/j.jmgm.2012.09.005. Epub 2012 Nov 27.

PMID:
23266508
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

A role for DNA polymerase V in G --> T mutations from the major benzo[a]pyrene N2-dG adduct when studied in a 5'-TGT sequence in E. coli.

Yin J, Seo KY, Loechler EL.

DNA Repair (Amst). 2004 Mar 4;3(3):323-34.

PMID:
15177047
[PubMed - indexed for MEDLINE]
9.

Characterization of Escherichia coli UmuC active-site loops identifies variants that confer UV hypersensitivity.

Hawver LA, Gillooly CA, Beuning PJ.

J Bacteriol. 2011 Oct;193(19):5400-11. doi: 10.1128/JB.05301-11. Epub 2011 Jul 22.

PMID:
21784925
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

The UmuC subunit of the E. coli DNA polymerase V shows a unique interaction with the β-clamp processivity factor.

Patoli AA, Winter JA, Bunting KA.

BMC Struct Biol. 2013 Jul 4;13:12. doi: 10.1186/1472-6807-13-12.

PMID:
23822808
[PubMed - indexed for MEDLINE]
Free PMC Article
11.
12.

Phenylalanine 171 is a molecular brake for translesion synthesis across benzo[a]pyrene-guanine adducts by human DNA polymerase kappa.

Sassa A, Niimi N, Fujimoto H, Katafuchi A, Grúz P, Yasui M, Gupta RC, Johnson F, Ohta T, Nohmi T.

Mutat Res. 2011 Jan 10;718(1-2):10-7. doi: 10.1016/j.mrgentox.2010.11.002. Epub 2010 Nov 13.

PMID:
21078407
[PubMed - indexed for MEDLINE]
13.

Escherichia coli Y family DNA polymerases.

Walsh JM, Hawver LA, Beuning PJ.

Front Biosci (Landmark Ed). 2011 Jun 1;16:3164-82. Review.

PMID:
21622227
[PubMed - indexed for MEDLINE]
14.

Extending the understanding of mutagenicity: structural insights into primer-extension past a benzo[a]pyrene diol epoxide-DNA adduct.

Perlow RA, Broyde S.

J Mol Biol. 2003 Apr 4;327(4):797-818.

PMID:
12654264
[PubMed - indexed for MEDLINE]
15.

Structure-based interpretation of missense mutations in Y-family DNA polymerases and their implications for polymerase function and lesion bypass.

Boudsocq F, Ling H, Yang W, Woodgate R.

DNA Repair (Amst). 2002 May 30;1(5):343-58. Review.

PMID:
12509239
[PubMed - indexed for MEDLINE]
16.

Three residues of the interdomain linker determine the conformation and single-base deletion fidelity of Y-family translesion polymerases.

Mukherjee P, Wilson RC, Lahiri I, Pata JD.

J Biol Chem. 2014 Mar 7;289(10):6323-31. doi: 10.1074/jbc.M113.537860. Epub 2014 Jan 10.

PMID:
24415763
[PubMed - indexed for MEDLINE]
17.

Translesion DNA synthesis by human DNA polymerase eta on templates containing a pyrimidopurinone deoxyguanosine adduct, 3-(2'-deoxy-beta-d-erythro-pentofuranosyl)pyrimido-[1,2-a]purin-10(3H)-one.

Stafford JB, Eoff RL, Kozekova A, Rizzo CJ, Guengerich FP, Marnett LJ.

Biochemistry. 2009 Jan 20;48(2):471-80. doi: 10.1021/bi801591a.

PMID:
19108641
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Properties and functions of Escherichia coli: Pol IV and Pol V.

Fuchs RP, Fujii S, Wagner J.

Adv Protein Chem. 2004;69:229-64. Review.

PMID:
15588845
[PubMed - indexed for MEDLINE]
19.

UmuD and RecA directly modulate the mutagenic potential of the Y family DNA polymerase DinB.

Godoy VG, Jarosz DF, Simon SM, Abyzov A, Ilyin V, Walker GC.

Mol Cell. 2007 Dec 28;28(6):1058-70.

PMID:
18158902
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

A single amino acid governs enhanced activity of DinB DNA polymerases on damaged templates.

Jarosz DF, Godoy VG, Delaney JC, Essigmann JM, Walker GC.

Nature. 2006 Jan 12;439(7073):225-8.

PMID:
16407906
[PubMed - indexed for MEDLINE]

Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

Write to the Help Desk