Format
Items per page
Sort by

Send to:

Choose Destination

Links from PubMed

Items: 1 to 20 of 218

1.

P2CS: a two-component system resource for prokaryotic signal transduction research.

Barakat M, Ortet P, Jourlin-Castelli C, Ansaldi M, Méjean V, Whitworth DE.

BMC Genomics. 2009 Jul 15;10:315. doi: 10.1186/1471-2164-10-315.

2.

P2CS: a database of prokaryotic two-component systems.

Barakat M, Ortet P, Whitworth DE.

Nucleic Acids Res. 2011 Jan;39(Database issue):D771-6. doi: 10.1093/nar/gkq1023. Epub 2010 Nov 4.

3.

P2CS: updates of the prokaryotic two-component systems database.

Ortet P, Whitworth DE, Santaella C, Achouak W, Barakat M.

Nucleic Acids Res. 2015 Jan;43(Database issue):D536-41. doi: 10.1093/nar/gku968. Epub 2014 Oct 16.

4.

Genome Properties: a system for the investigation of prokaryotic genetic content for microbiology, genome annotation and comparative genomics.

Haft DH, Selengut JD, Brinkac LM, Zafar N, White O.

Bioinformatics. 2005 Feb 1;21(3):293-306. Epub 2004 Sep 3.

5.

Sentra, a database of signal transduction proteins.

Maltsev N, Marland E, Yu GX, Bhatnagar S, Lusk R.

Nucleic Acids Res. 2002 Jan 1;30(1):349-50.

6.

MaGe: a microbial genome annotation system supported by synteny results.

Vallenet D, Labarre L, Rouy Z, Barbe V, Bocs S, Cruveiller S, Lajus A, Pascal G, Scarpelli C, Médigue C.

Nucleic Acids Res. 2006 Jan 10;34(1):53-65. Print 2006.

7.

DAVID Knowledgebase: a gene-centered database integrating heterogeneous gene annotation resources to facilitate high-throughput gene functional analysis.

Sherman BT, Huang da W, Tan Q, Guo Y, Bour S, Liu D, Stephens R, Baseler MW, Lane HC, Lempicki RA.

BMC Bioinformatics. 2007 Nov 2;8:426.

8.

Two-component systems of the myxobacteria: structure, diversity and evolutionary relationships.

Whitworth DE, Cock PJ.

Microbiology. 2008 Feb;154(Pt 2):360-72. doi: 10.1099/mic.0.2007/013672-0.

PMID:
18227240
9.

A database of phylogenetically atypical genes in archaeal and bacterial genomes, identified using the DarkHorse algorithm.

Podell S, Gaasterland T, Allen EE.

BMC Bioinformatics. 2008 Oct 7;9:419. doi: 10.1186/1471-2105-9-419.

10.

P2TF: a comprehensive resource for analysis of prokaryotic transcription factors.

Ortet P, De Luca G, Whitworth DE, Barakat M.

BMC Genomics. 2012 Nov 15;13:628. doi: 10.1186/1471-2164-13-628.

11.

PPD - Proteome Profile Database.

Sakharkar KR, Chow VT.

In Silico Biol. 2004;4(2):219-23.

PMID:
15107025
12.

An experimental metagenome data management and analysis system.

Markowitz VM, Ivanova N, Palaniappan K, Szeto E, Korzeniewski F, Lykidis A, Anderson I, Mavromatis K, Kunin V, Garcia Martin H, Dubchak I, Hugenholtz P, Kyrpides NC.

Bioinformatics. 2006 Jul 15;22(14):e359-67. Erratum in: Bioinformatics. 2006 Oct 15;22(20):2580. Mavrommatis, Konstantinos [corrected to Mavromatis, Konstantinos].

13.

GeneTrees: a phylogenomics resource for prokaryotes.

Tian Y, Dickerman AW.

Nucleic Acids Res. 2007 Jan;35(Database issue):D328-31. Epub 2006 Dec 6.

14.
15.

GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes.

Pati A, Ivanova NN, Mikhailova N, Ovchinnikova G, Hooper SD, Lykidis A, Kyrpides NC.

Nat Methods. 2010 Jun;7(6):455-7. doi: 10.1038/nmeth.1457. Epub 2010 May 2.

PMID:
20436475
16.

Towards multidimensional genome annotation.

Reed JL, Famili I, Thiele I, Palsson BO.

Nat Rev Genet. 2006 Feb;7(2):130-41. Review.

PMID:
16418748
17.

In silico characterization of proteins: UniProt, InterPro and Integr8.

Mulder NJ, Kersey P, Pruess M, Apweiler R.

Mol Biotechnol. 2008 Feb;38(2):165-77. doi: 10.1007/s12033-007-9003-x. Epub 2007 Oct 4. Review.

PMID:
18219596
18.

SENTRA, a database of signal transduction proteins.

D'Souza M, Romine MF, Maltsev N.

Nucleic Acids Res. 2000 Jan 1;28(1):335-6.

19.
20.

TIGRFAMs and Genome Properties: tools for the assignment of molecular function and biological process in prokaryotic genomes.

Selengut JD, Haft DH, Davidsen T, Ganapathy A, Gwinn-Giglio M, Nelson WC, Richter AR, White O.

Nucleic Acids Res. 2007 Jan;35(Database issue):D260-4. Epub 2006 Dec 6.

Format
Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

Write to the Help Desk