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Results: 1 to 20 of 99

1.

Dereplication and de novo sequencing of nonribosomal peptides.

Ng J, Bandeira N, Liu WT, Ghassemian M, Simmons TL, Gerwick WH, Linington R, Dorrestein PC, Pevzner PA.

Nat Methods. 2009 Aug;6(8):596-9. doi: 10.1038/nmeth.1350. Epub 2009 Jul 13.

PMID:
19597502
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Nonribosomal peptides: from genes to products.

Schwarzer D, Finking R, Marahiel MA.

Nat Prod Rep. 2003 Jun;20(3):275-87. Review.

PMID:
12828367
[PubMed - indexed for MEDLINE]
3.

Multiplex de novo sequencing of peptide antibiotics.

Mohimani H, Liu WT, Yang YL, Gaudêncio SP, Fenical W, Dorrestein PC, Pevzner PA.

J Comput Biol. 2011 Nov;18(11):1371-81. doi: 10.1089/cmb.2011.0158. Epub 2011 Oct 28.

PMID:
22035290
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Nonribosomal peptide synthesis in animals: the cyclodipeptide synthase of Nematostella.

Seguin J, Moutiez M, Li Y, Belin P, Lecoq A, Fonvielle M, Charbonnier JB, Pernodet JL, Gondry M.

Chem Biol. 2011 Nov 23;18(11):1362-8. doi: 10.1016/j.chembiol.2011.09.010.

PMID:
22118670
[PubMed - indexed for MEDLINE]
Free Article
5.

SPIDER: software for protein identification from sequence tags with de novo sequencing error.

Han Y, Ma B, Zhang K.

Proc IEEE Comput Syst Bioinform Conf. 2004:206-15.

PMID:
16448014
[PubMed - indexed for MEDLINE]
6.

A proteomic survey of nonribosomal peptide and polyketide biosynthesis in actinobacteria.

Chen Y, Ntai I, Ju KS, Unger M, Zamdborg L, Robinson SJ, Doroghazi JR, Labeda DP, Metcalf WW, Kelleher NL.

J Proteome Res. 2012 Jan 1;11(1):85-94. doi: 10.1021/pr2009115. Epub 2011 Oct 25.

PMID:
21978092
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

pNovo: de novo peptide sequencing and identification using HCD spectra.

Chi H, Sun RX, Yang B, Song CQ, Wang LH, Liu C, Fu Y, Yuan ZF, Wang HP, He SM, Dong MQ.

J Proteome Res. 2010 May 7;9(5):2713-24. doi: 10.1021/pr100182k.

PMID:
20329752
[PubMed - indexed for MEDLINE]
8.

Algorithms for the de novo sequencing of peptides from tandem mass spectra.

Allmer J.

Expert Rev Proteomics. 2011 Oct;8(5):645-57. doi: 10.1586/epr.11.54. Review.

PMID:
21999834
[PubMed - indexed for MEDLINE]
9.

DeNovoID: a web-based tool for identifying peptides from sequence and mass tags deduced from de novo peptide sequencing by mass spectroscopy.

Halligan BD, Ruotti V, Twigger SN, Greene AS.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W376-81.

PMID:
15980493
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

NORINE: a database of nonribosomal peptides.

Caboche S, Pupin M, Leclère V, Fontaine A, Jacques P, Kucherov G.

Nucleic Acids Res. 2008 Jan;36(Database issue):D326-31. Epub 2007 Oct 2.

PMID:
17913739
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Application of an efficient gene targeting system linking secondary metabolites to their biosynthetic genes in Aspergillus terreus.

Guo CJ, Knox BP, Sanchez JF, Chiang YM, Bruno KS, Wang CC.

Org Lett. 2013 Jul 19;15(14):3562-5. doi: 10.1021/ol401384v. Epub 2013 Jul 10.

PMID:
23841722
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

A suboptimal algorithm for de novo peptide sequencing via tandem mass spectrometry.

Lu B, Chen T.

J Comput Biol. 2003;10(1):1-12.

PMID:
12676047
[PubMed - indexed for MEDLINE]
13.

The sypA, sypS, and sypC synthetase genes encode twenty-two modules involved in the nonribosomal peptide synthesis of syringopeptin by Pseudomonas syringae pv. syringae B301D.

Scholz-Schroeder BK, Soule JD, Gross DC.

Mol Plant Microbe Interact. 2003 Apr;16(4):271-80.

PMID:
12744455
[PubMed - indexed for MEDLINE]
Free Article
14.

Searching sequence databases via de novo peptide sequencing by tandem mass spectrometry.

Johnson RS, Taylor JA.

Mol Biotechnol. 2002 Nov;22(3):301-15.

PMID:
12448884
[PubMed - indexed for MEDLINE]
15.

Genome-based cryptic gene discovery and functional identification of NRPS siderophore peptide in Streptomyces peucetius.

Park HM, Kim BG, Chang D, Malla S, Joo HS, Kim EJ, Park SJ, Sohng JK, Kim PI.

Appl Microbiol Biotechnol. 2013 Feb;97(3):1213-22. doi: 10.1007/s00253-012-4268-9. Epub 2012 Jul 24.

PMID:
22825833
[PubMed - indexed for MEDLINE]
16.

Multi-spectra peptide sequencing and its applications to multistage mass spectrometry.

Bandeira N, Olsen JV, Mann JV, Mann M, Pevzner PA.

Bioinformatics. 2008 Jul 1;24(13):i416-23.

PMID:
18785330
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Introduction of a non-natural amino acid into a nonribosomal peptide antibiotic by modification of adenylation domain specificity.

Thirlway J, Lewis R, Nunns L, Al Nakeeb M, Styles M, Struck AW, Smith CP, Micklefield J.

Angew Chem Int Ed Engl. 2012 Jul 16;51(29):7181-4. doi: 10.1002/anie.201202043. Epub 2012 Jun 18.

PMID:
22711659
[PubMed - indexed for MEDLINE]
18.

CYCLONE--a utility for de novo sequencing of microbial cyclic peptides.

Kavan D, Kuzma M, Lemr K, Schug KA, Havlicek V.

J Am Soc Mass Spectrom. 2013 Aug;24(8):1177-84. doi: 10.1007/s13361-013-0652-7. Epub 2013 May 24.

PMID:
23702710
[PubMed - indexed for MEDLINE]
19.

NRPquest: Coupling Mass Spectrometry and Genome Mining for Nonribosomal Peptide Discovery.

Mohimani H, Liu WT, Kersten RD, Moore BS, Dorrestein PC, Pevzner PA.

J Nat Prod. 2014 Aug 12. [Epub ahead of print]

PMID:
25116163
[PubMed - as supplied by publisher]
20.

De novo sequencing methods in proteomics.

Hughes C, Ma B, Lajoie GA.

Methods Mol Biol. 2010;604:105-21. doi: 10.1007/978-1-60761-444-9_8.

PMID:
20013367
[PubMed - indexed for MEDLINE]

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