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Results: 1 to 20 of 146

1.

Ancestral population genomics: the coalescent hidden Markov model approach.

Dutheil JY, Ganapathy G, Hobolth A, Mailund T, Uyenoyama MK, Schierup MH.

Genetics. 2009 Sep;183(1):259-74. doi: 10.1534/genetics.109.103010. Epub 2009 Jul 6.

PMID:
19581452
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Genomic relationships and speciation times of human, chimpanzee, and gorilla inferred from a coalescent hidden Markov model.

Hobolth A, Christensen OF, Mailund T, Schierup MH.

PLoS Genet. 2007 Feb 23;3(2):e7. Epub 2006 Nov 30.

PMID:
17319744
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Estimation of hominoid ancestral population sizes under bayesian coalescent models incorporating mutation rate variation and sequencing errors.

Burgess R, Yang Z.

Mol Biol Evol. 2008 Sep;25(9):1979-94. doi: 10.1093/molbev/msn148. Epub 2008 Jul 4.

PMID:
18603620
[PubMed - indexed for MEDLINE]
Free Article
4.
5.

Incomplete lineage sorting patterns among human, chimpanzee, and orangutan suggest recent orangutan speciation and widespread selection.

Hobolth A, Dutheil JY, Hawks J, Schierup MH, Mailund T.

Genome Res. 2011 Mar;21(3):349-56. doi: 10.1101/gr.114751.110. Epub 2011 Jan 26.

PMID:
21270173
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

A new approach to estimate parameters of speciation models with application to apes.

Becquet C, Przeworski M.

Genome Res. 2007 Oct;17(10):1505-19. Epub 2007 Aug 21.

PMID:
17712021
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Ancestral population genomics.

Dutheil JY, Hobolth A.

Methods Mol Biol. 2012;856:293-313. doi: 10.1007/978-1-61779-585-5_12. Review.

PMID:
22399464
[PubMed - indexed for MEDLINE]
8.

Approximating the coalescent with recombination.

McVean GA, Cardin NJ.

Philos Trans R Soc Lond B Biol Sci. 2005 Jul 29;360(1459):1387-93.

PMID:
16048782
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Estimating divergence time and ancestral effective population size of Bornean and Sumatran orangutan subspecies using a coalescent hidden Markov model.

Mailund T, Dutheil JY, Hobolth A, Lunter G, Schierup MH.

PLoS Genet. 2011 Mar;7(3):e1001319. doi: 10.1371/journal.pgen.1001319. Epub 2011 Mar 3.

PMID:
21408205
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

A new isolation with migration model along complete genomes infers very different divergence processes among closely related great ape species.

Mailund T, Halager AE, Westergaard M, Dutheil JY, Munch K, Andersen LN, Lunter G, Pr├╝fer K, Scally A, Hobolth A, Schierup MH.

PLoS Genet. 2012;8(12):e1003125. doi: 10.1371/journal.pgen.1003125. Epub 2012 Dec 20.

PMID:
23284294
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Bayes estimation of species divergence times and ancestral population sizes using DNA sequences from multiple loci.

Rannala B, Yang Z.

Genetics. 2003 Aug;164(4):1645-56.

PMID:
12930768
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Reconstructing the demographic history of the human lineage using whole-genome sequences from human and three great apes.

Hara Y, Imanishi T, Satta Y.

Genome Biol Evol. 2012;4(11):1133-45. doi: 10.1093/gbe/evs075.

PMID:
22975719
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Patterns of autosomal divergence between the human and chimpanzee genomes support an allopatric model of speciation.

Webster MT.

Gene. 2009 Aug 15;443(1-2):70-5. doi: 10.1016/j.gene.2009.05.006. Epub 2009 May 20.

PMID:
19463924
[PubMed - indexed for MEDLINE]
14.

Linking great apes genome evolution across time scales using polymorphism-aware phylogenetic models.

De Maio N, Schl├Âtterer C, Kosiol C.

Mol Biol Evol. 2013 Oct;30(10):2249-62. doi: 10.1093/molbev/mst131. Epub 2013 Aug 1.

PMID:
23906727
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Maximum likelihood implementation of an isolation-with-migration model with three species for testing speciation with gene flow.

Zhu T, Yang Z.

Mol Biol Evol. 2012 Oct;29(10):3131-42. Epub 2012 Apr 13.

PMID:
22504520
[PubMed - indexed for MEDLINE]
Free Article
16.

Divergence time and population size in the lineage leading to modern humans.

Takahata N, Satta Y, Klein J.

Theor Popul Biol. 1995 Oct;48(2):198-221.

PMID:
7482371
[PubMed - indexed for MEDLINE]
17.

Sequence alignments and pair hidden Markov models using evolutionary history.

Knudsen B, Miyamoto MM.

J Mol Biol. 2003 Oct 17;333(2):453-60.

PMID:
14529629
[PubMed - indexed for MEDLINE]
18.

Hominoid phylogeny estimated by model selection using goodness of fit significance tests.

Czelusniak J, Goodman M.

Mol Phylogenet Evol. 1995 Sep;4(3):283-90.

PMID:
8845964
[PubMed - indexed for MEDLINE]
19.

The effect of gene flow on the coalescent time in the human-chimpanzee ancestral population.

Innan H, Watanabe H.

Mol Biol Evol. 2006 May;23(5):1040-7. Epub 2006 Feb 22.

PMID:
16495349
[PubMed - indexed for MEDLINE]
Free Article
20.

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