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Items: 1 to 20 of 73


Statistical lower bounds on protein copy number from fluorescence expression images.

Zamparo L, Perkins TJ.

Bioinformatics. 2009 Oct 15;25(20):2670-6. doi: 10.1093/bioinformatics/btp415. Epub 2009 Jul 2.


A database for management of gene expression data in situ.

Poustelnikova E, Pisarev A, Blagov M, Samsonova M, Reinitz J.

Bioinformatics. 2004 Sep 22;20(14):2212-21. Epub 2004 Apr 1.


FlyEx, the quantitative atlas on segmentation gene expression at cellular resolution.

Pisarev A, Poustelnikova E, Samsonova M, Reinitz J.

Nucleic Acids Res. 2009 Jan;37(Database issue):D560-6. doi: 10.1093/nar/gkn717. Epub 2008 Oct 25.


Statistical analysis of high-density oligonucleotide arrays: a multiplicative noise model.

Sásik R, Calvo E, Corbeil J.

Bioinformatics. 2002 Dec;18(12):1633-40.


A regression system for estimation of errors introduced by confocal imaging into gene expression data in situ.

Myasnikova E, Surkova S, Stein G, Pisarev A, Samsonova M.

BMC Bioinformatics. 2011 Aug 4;12:320. doi: 10.1186/1471-2105-12-320.


Joint stage recognition and anatomical annotation of Drosophila gene expression patterns.

Cai X, Wang H, Huang H, Ding C.

Bioinformatics. 2012 Jun 15;28(12):i16-24. doi: 10.1093/bioinformatics/bts220.


The computational analysis of scientific literature to define and recognize gene expression clusters.

Raychaudhuri S, Chang JT, Imam F, Altman RB.

Nucleic Acids Res. 2003 Aug 1;31(15):4553-60.


Biological network mapping and source signal deduction.

Brynildsen MP, Wu TY, Jang SS, Liao JC.

Bioinformatics. 2007 Jul 15;23(14):1783-91. Epub 2007 May 11.


Transcriptional control in the segmentation gene network of Drosophila.

Schroeder MD, Pearce M, Fak J, Fan H, Unnerstall U, Emberly E, Rajewsky N, Siggia ED, Gaul U.

PLoS Biol. 2004 Sep;2(9):E271. Epub 2004 Aug 31.


Comparing transcription rate and mRNA abundance as parameters for biochemical pathway and network analysis.

Hayles B, Yellaboina S, Wang D.

PLoS One. 2010 Mar 26;5(3):e9908. doi: 10.1371/journal.pone.0009908.


Dynamic covariation between gene expression and proteome characteristics.

Sharabiani MT, Siermala M, Lehtinen TO, Vihinen M.

BMC Bioinformatics. 2005 Aug 30;6:215.


TopoGSA: network topological gene set analysis.

Glaab E, Baudot A, Krasnogor N, Valencia A.

Bioinformatics. 2010 May 1;26(9):1271-2. doi: 10.1093/bioinformatics/btq131. Epub 2010 Mar 24.


Quantitative inference of dynamic regulatory pathways via microarray data.

Chang WC, Li CW, Chen BS.

BMC Bioinformatics. 2005 Mar 7;6:44.


Transcript mapping with high-density oligonucleotide tiling arrays.

Huber W, Toedling J, Steinmetz LM.

Bioinformatics. 2006 Aug 15;22(16):1963-70. Epub 2006 Jun 20.


A copula method for modeling directional dependence of genes.

Kim JM, Jung YS, Sungur EA, Han KH, Park C, Sohn I.

BMC Bioinformatics. 2008 May 1;9:225. doi: 10.1186/1471-2105-9-225.


Statistical methods to infer cooperative binding among transcription factors in Saccharomyces cerevisiae.

Datta D, Zhao H.

Bioinformatics. 2008 Feb 15;24(4):545-52. Epub 2007 Nov 7.


Single molecule dynamics and statistical fluctuations of gene regulatory networks: a repressilator.

Kim KY, Lepzelter D, Wang J.

J Chem Phys. 2007 Jan 21;126(3):034702.


A Gibbs sampler for the identification of gene expression and network connectivity consistency.

Brynildsen MP, Tran LM, Liao JC.

Bioinformatics. 2006 Dec 15;22(24):3040-6. Epub 2006 Oct 23.

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