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Results: 1 to 20 of 103

1.

Representative transcript sets for evaluating a translational initiation sites predictor.

Zeng J, Alhajj R, Demetrick DJ.

BMC Bioinformatics. 2009 Jul 2;10:206. doi: 10.1186/1471-2105-10-206.

PMID:
19573244
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

MetWAMer: eukaryotic translation initiation site prediction.

Sparks ME, Brendel V.

BMC Bioinformatics. 2008 Sep 18;9:381. doi: 10.1186/1471-2105-9-381.

PMID:
18801175
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Discriminative motif discovery in DNA and protein sequences using the DEME algorithm.

Redhead E, Bailey TL.

BMC Bioinformatics. 2007 Oct 15;8:385.

PMID:
17937785
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

A 3D sequence-independent representation of the protein data bank.

Fischer D, Tsai CJ, Nussinov R, Wolfson H.

Protein Eng. 1995 Oct;8(10):981-97.

PMID:
8771179
[PubMed - indexed for MEDLINE]
5.

Interactively optimizing signal-to-noise ratios in expression profiling: project-specific algorithm selection and detection p-value weighting in Affymetrix microarrays.

Seo J, Bakay M, Chen YW, Hilmer S, Shneiderman B, Hoffman EP.

Bioinformatics. 2004 Nov 1;20(16):2534-44. Epub 2004 Apr 29.

PMID:
15117752
[PubMed - indexed for MEDLINE]
Free Article
6.

High quality protein sequence alignment by combining structural profile prediction and profile alignment using SABER-TOOTH.

Teichert F, Minning J, Bastolla U, Porto M.

BMC Bioinformatics. 2010 May 14;11:251. doi: 10.1186/1471-2105-11-251.

PMID:
20470364
[PubMed - indexed for MEDLINE]
Free PMC Article
7.
8.

Selection of representative protein data sets.

Hobohm U, Scharf M, Schneider R, Sander C.

Protein Sci. 1992 Mar;1(3):409-17.

PMID:
1304348
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Cross-over between discrete and continuous protein structure space: insights into automatic classification and networks of protein structures.

Pascual-GarcĂ­a A, Abia D, Ortiz AR, Bastolla U.

PLoS Comput Biol. 2009 Mar;5(3):e1000331. doi: 10.1371/journal.pcbi.1000331. Epub 2009 Mar 27.

PMID:
19325884
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

OXBench: a benchmark for evaluation of protein multiple sequence alignment accuracy.

Raghava GP, Searle SM, Audley PC, Barber JD, Barton GJ.

BMC Bioinformatics. 2003 Oct 10;4:47.

PMID:
14552658
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

A comprehensive system for evaluation of remote sequence similarity detection.

Qi Y, Sadreyev RI, Wang Y, Kim BH, Grishin NV.

BMC Bioinformatics. 2007 Aug 28;8:314.

PMID:
17725841
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Computational evaluation of TIS annotation for prokaryotic genomes.

Hu GQ, Zheng X, Ju LN, Zhu H, She ZS.

BMC Bioinformatics. 2008 Mar 25;9:160. doi: 10.1186/1471-2105-9-160.

PMID:
18366730
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Consensus alignment for reliable framework prediction in homology modeling.

Prasad JC, Comeau SR, Vajda S, Camacho CJ.

Bioinformatics. 2003 Sep 1;19(13):1682-91.

PMID:
12967965
[PubMed - indexed for MEDLINE]
Free Article
14.

Fast tandem mass spectra-based protein identification regardless of the number of spectra or potential modifications examined.

Falkner J, Andrews P.

Bioinformatics. 2005 May 15;21(10):2177-84. Epub 2005 Mar 3.

PMID:
15746284
[PubMed - indexed for MEDLINE]
Free Article
15.

Background rareness-based iterative multiple sequence alignment algorithm for regulatory element detection.

Narasimhan C, LoCascio P, Uberbacher E.

Bioinformatics. 2003 Oct 12;19(15):1952-63.

PMID:
14555629
[PubMed - indexed for MEDLINE]
Free Article
16.

Removing near-neighbour redundancy from large protein sequence collections.

Holm L, Sander C.

Bioinformatics. 1998 Jun;14(5):423-9.

PMID:
9682055
[PubMed - indexed for MEDLINE]
Free Article
17.

Transcript and protein expression profiles of the NCI-60 cancer cell panel: an integromic microarray study.

Shankavaram UT, Reinhold WC, Nishizuka S, Major S, Morita D, Chary KK, Reimers MA, Scherf U, Kahn A, Dolginow D, Cossman J, Kaldjian EP, Scudiero DA, Petricoin E, Liotta L, Lee JK, Weinstein JN.

Mol Cancer Ther. 2007 Mar;6(3):820-32. Epub 2007 Mar 5.

PMID:
17339364
[PubMed - indexed for MEDLINE]
Free Article
18.

Accurate prediction for atomic-level protein design and its application in diversifying the near-optimal sequence space.

Fromer M, Yanover C.

Proteins. 2009 May 15;75(3):682-705. doi: 10.1002/prot.22280.

PMID:
19003998
[PubMed - indexed for MEDLINE]
19.

Transient protein-protein interface prediction: datasets, features, algorithms, and the RAD-T predictor.

Bendell CJ, Liu S, Aumentado-Armstrong T, Istrate B, Cernek PT, Khan S, Picioreanu S, Zhao M, Murgita RA.

BMC Bioinformatics. 2014 Mar 24;15:82. doi: 10.1186/1471-2105-15-82.

PMID:
24661439
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

SVM-Fold: a tool for discriminative multi-class protein fold and superfamily recognition.

Melvin I, Ie E, Kuang R, Weston J, Stafford WN, Leslie C.

BMC Bioinformatics. 2007 May 22;8 Suppl 4:S2.

PMID:
17570145
[PubMed - indexed for MEDLINE]
Free PMC Article

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