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Items: 1 to 20 of 450

1.

Integrated analysis of DNA copy number and gene expression microarray data using gene sets.

Menezes RX, Boetzer M, Sieswerda M, van Ommen GJ, Boer JM.

BMC Bioinformatics. 2009 Jun 29;10:203. doi: 10.1186/1471-2105-10-203.

2.

Visualization-based discovery and analysis of genomic aberrations in microarray data.

Myers CL, Chen X, Troyanskaya OG.

BMC Bioinformatics. 2005 Jun 13;6:146.

3.

Accurate detection of aneuploidies in array CGH and gene expression microarray data.

Myers CL, Dunham MJ, Kung SY, Troyanskaya OG.

Bioinformatics. 2004 Dec 12;20(18):3533-43. Epub 2004 Jul 29.

4.

Cross-platform comparison and visualisation of gene expression data using co-inertia analysis.

Culhane AC, Perrière G, Higgins DG.

BMC Bioinformatics. 2003 Nov 21;4:59.

5.

Integrated analysis of copy number alteration and RNA expression profiles of cancer using a high-resolution whole-genome oligonucleotide array.

Jung SH, Shin SH, Yim SH, Choi HS, Lee SH, Chung YJ.

Exp Mol Med. 2009 Jul 31;41(7):462-70. doi: 10.3858/emm.2009.41.7.051.

6.

Identification of genes involved in squamous cell carcinoma of the lung using synchronized data from DNA copy number and transcript expression profiling analysis.

Lo KC, Stein LC, Panzarella JA, Cowell JK, Hawthorn L.

Lung Cancer. 2008 Mar;59(3):315-31. Epub 2007 Oct 29.

PMID:
18029052
7.

Integrative genome-wide analysis reveals a robust genomic glioblastoma signature associated with copy number driving changes in gene expression.

de Tayrac M, Etcheverry A, Aubry M, Saïkali S, Hamlat A, Quillien V, Le Treut A, Galibert MD, Mosser J.

Genes Chromosomes Cancer. 2009 Jan;48(1):55-68. doi: 10.1002/gcc.20618.

PMID:
18828157
8.

Cross-species and cross-platform gene expression studies with the Bioconductor-compliant R package 'annotationTools'.

Kuhn A, Luthi-Carter R, Delorenzi M.

BMC Bioinformatics. 2008 Jan 17;9:26. doi: 10.1186/1471-2105-9-26.

9.

Jointly analyzing gene expression and copy number data in breast cancer using data reduction models.

Berger JA, Hautaniemi S, Mitra SK, Astola J.

IEEE/ACM Trans Comput Biol Bioinform. 2006 Jan-Mar;3(1):2-16.

PMID:
17048389
10.

CanGEM: mining gene copy number changes in cancer.

Scheinin I, Myllykangas S, Borze I, Böhling T, Knuutila S, Saharinen J.

Nucleic Acids Res. 2008 Jan;36(Database issue):D830-5. Epub 2007 Oct 11.

11.

Identification of target genes in laryngeal squamous cell carcinoma by high-resolution copy number and gene expression microarray analyses.

Järvinen AK, Autio R, Haapa-Paananen S, Wolf M, Saarela M, Grénman R, Leivo I, Kallioniemi O, Mäkitie AA, Monni O.

Oncogene. 2006 Nov 2;25(52):6997-7008. Epub 2006 May 22.

PMID:
16715129
12.

Advanced analysis and visualization of gene copy number and expression data.

Autio R, Saarela M, Järvinen AK, Hautaniemi S, Astola J.

BMC Bioinformatics. 2009 Jan 30;10 Suppl 1:S70. doi: 10.1186/1471-2105-10-S1-S70.

13.

Can survival prediction be improved by merging gene expression data sets?

Yasrebi H, Sperisen P, Praz V, Bucher P.

PLoS One. 2009 Oct 23;4(10):e7431. doi: 10.1371/journal.pone.0007431.

14.

DNA copy number alterations and expression of relevant genes in triple-negative breast cancer.

Han W, Jung EM, Cho J, Lee JW, Hwang KT, Yang SJ, Kang JJ, Bae JY, Jeon YK, Park IA, Nicolau M, Jeffrey SS, Noh DY.

Genes Chromosomes Cancer. 2008 Jun;47(6):490-9. doi: 10.1002/gcc.20550.

PMID:
18314908
15.

Genome-wide analysis of DNA copy number alterations and gene expression in gastric cancer.

Tsukamoto Y, Uchida T, Karnan S, Noguchi T, Nguyen LT, Tanigawa M, Takeuchi I, Matsuura K, Hijiya N, Nakada C, Kishida T, Kawahara K, Ito H, Murakami K, Fujioka T, Seto M, Moriyama M.

J Pathol. 2008 Dec;216(4):471-82. doi: 10.1002/path.2424.

PMID:
18798223
16.

Design and evaluation of Actichip, a thematic microarray for the study of the actin cytoskeleton.

Muller J, Mehlen A, Vetter G, Yatskou M, Muller A, Chalmel F, Poch O, Friederich E, Vallar L.

BMC Genomics. 2007 Aug 29;8:294.

17.

Molecular characterization of breast cancer with high-resolution oligonucleotide comparative genomic hybridization array.

Andre F, Job B, Dessen P, Tordai A, Michiels S, Liedtke C, Richon C, Yan K, Wang B, Vassal G, Delaloge S, Hortobagyi GN, Symmans WF, Lazar V, Pusztai L.

Clin Cancer Res. 2009 Jan 15;15(2):441-51. doi: 10.1158/1078-0432.CCR-08-1791.

18.

Using expression arrays for copy number detection: an example from E. coli.

Skvortsov D, Abdueva D, Stitzer ME, Finkel SE, Tavaré S.

BMC Bioinformatics. 2007 Jun 14;8:203.

19.

Integrated analysis of copy number alterations and gene expression: a bivariate assessment of equally directed abnormalities.

Schäfer M, Schwender H, Merk S, Haferlach C, Ickstadt K, Dugas M.

Bioinformatics. 2009 Dec 15;25(24):3228-35. doi: 10.1093/bioinformatics/btp592. Epub 2009 Oct 14.

20.

PAGE: parametric analysis of gene set enrichment.

Kim SY, Volsky DJ.

BMC Bioinformatics. 2005 Jun 8;6:144.

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