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Results: 1 to 20 of 149

1.

Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm.

Kumar P, Henikoff S, Ng PC.

Nat Protoc. 2009;4(7):1073-81. doi: 10.1038/nprot.2009.86. Epub 2009 Jun 25.

PMID:
19561590
[PubMed - indexed for MEDLINE]
2.

Accounting for human polymorphisms predicted to affect protein function.

Ng PC, Henikoff S.

Genome Res. 2002 Mar;12(3):436-46.

PMID:
11875032
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

SIFT: Predicting amino acid changes that affect protein function.

Ng PC, Henikoff S.

Nucleic Acids Res. 2003 Jul 1;31(13):3812-4.

PMID:
12824425
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

SIFT web server: predicting effects of amino acid substitutions on proteins.

Sim NL, Kumar P, Hu J, Henikoff S, Schneider G, Ng PC.

Nucleic Acids Res. 2012 Jul;40(Web Server issue):W452-7. doi: 10.1093/nar/gks539. Epub 2012 Jun 11.

PMID:
22689647
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

A bioinformatics approach for the phenotype prediction of nonsynonymous single nucleotide polymorphisms in human cytochromes P450.

Wang LL, Li Y, Zhou SF.

Drug Metab Dispos. 2009 May;37(5):977-91. doi: 10.1124/dmd.108.026047. Epub 2009 Feb 9.

PMID:
19204079
[PubMed - indexed for MEDLINE]
Free Article
6.

Functional characterization of non-synonymous single nucleotide polymorphisms in the gene encoding human multidrug resistance protein 1 (MRP1/ABCC1).

L├ętourneau IJ, Deeley RG, Cole SP.

Pharmacogenet Genomics. 2005 Sep;15(9):647-57.

PMID:
16041243
[PubMed - indexed for MEDLINE]
7.

Many amino acid substitution variants identified in DNA repair genes during human population screenings are predicted to impact protein function.

Xi T, Jones IM, Mohrenweiser HW.

Genomics. 2004 Jun;83(6):970-9.

PMID:
15177551
[PubMed - indexed for MEDLINE]
8.

Large-scale analysis of non-synonymous coding region single nucleotide polymorphisms.

Clifford RJ, Edmonson MN, Nguyen C, Buetow KH.

Bioinformatics. 2004 May 1;20(7):1006-14. Epub 2004 Jan 29.

PMID:
14751981
[PubMed - indexed for MEDLINE]
Free Article
9.

Applications for protein sequence-function evolution data: mRNA/protein expression analysis and coding SNP scoring tools.

Thomas PD, Kejariwal A, Guo N, Mi H, Campbell MJ, Muruganujan A, Lazareva-Ulitsky B.

Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W645-50.

PMID:
16912992
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Predicting deleterious amino acid substitutions.

Ng PC, Henikoff S.

Genome Res. 2001 May;11(5):863-74.

PMID:
11337480
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Annotation of non-synonymous single polymorphisms in human liver proteome by mass spectrometry.

Chen M, Yang B, Ying W, He F, Qian X.

Protein Pept Lett. 2010 Mar;17(3):277-86.

PMID:
19508201
[PubMed - indexed for MEDLINE]
12.

Computational approaches for predicting the biological effect of p53 missense mutations: a comparison of three sequence analysis based methods.

Mathe E, Olivier M, Kato S, Ishioka C, Hainaut P, Tavtigian SV.

Nucleic Acids Res. 2006 Mar 6;34(5):1317-25. Print 2006.

PMID:
16522644
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

MutDB services: interactive structural analysis of mutation data.

Dantzer J, Moad C, Heiland R, Mooney S.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W311-4.

PMID:
15980479
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Detection of conserved physico-chemical characteristics of proteins by analyzing clusters of positions with co-ordinated substitutions.

Afonnikov DA, Oshchepkov DY, Kolchanov NA.

Bioinformatics. 2001 Nov;17(11):1035-46.

PMID:
11724732
[PubMed - indexed for MEDLINE]
Free Article
15.

Approaches and resources for prediction of the effects of non-synonymous single nucleotide polymorphism on protein function and interactions.

Teng S, Michonova-Alexova E, Alexov E.

Curr Pharm Biotechnol. 2008 Apr;9(2):123-33. Review.

PMID:
18393868
[PubMed - indexed for MEDLINE]
16.

Predicting the insurgence of human genetic diseases associated to single point protein mutations with support vector machines and evolutionary information.

Capriotti E, Calabrese R, Casadio R.

Bioinformatics. 2006 Nov 15;22(22):2729-34. Epub 2006 Aug 7.

PMID:
16895930
[PubMed - indexed for MEDLINE]
Free Article
17.

Screening for deleterious nonsynonymous single-nucleotide polymorphisms in genes involved in steroid hormone metabolism and response.

Johnson MM, Houck J, Chen C.

Cancer Epidemiol Biomarkers Prev. 2005 May;14(5):1326-9.

PMID:
15894696
[PubMed - indexed for MEDLINE]
Free Article
18.

Predicting the phenotypic effects of non-synonymous single nucleotide polymorphisms based on support vector machines.

Tian J, Wu N, Guo X, Guo J, Zhang J, Fan Y.

BMC Bioinformatics. 2007 Nov 16;8:450.

PMID:
18005451
[PubMed - indexed for MEDLINE]
Free PMC Article
19.
20.

Three novel thiopurine S-methyltransferase allelic variants (TPMT*20, *21, *22) - association with decreased enzyme function.

Schaeffeler E, Eichelbaum M, Reinisch W, Zanger UM, Schwab M.

Hum Mutat. 2006 Sep;27(9):976.

PMID:
16917910
[PubMed - indexed for MEDLINE]

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