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Results: 1 to 20 of 127

Similar articles for PubMed (Select 19536157)

1.

Argonaute HITS-CLIP decodes microRNA-mRNA interaction maps.

Chi SW, Zang JB, Mele A, Darnell RB.

Nature. 2009 Jul 23;460(7254):479-86. doi: 10.1038/nature08170. Epub 2009 Jun 17.

2.

An alternative mode of microRNA target recognition.

Chi SW, Hannon GJ, Darnell RB.

Nat Struct Mol Biol. 2012 Feb 12;19(3):321-7. doi: 10.1038/nsmb.2230.

3.

starBase: a database for exploring microRNA-mRNA interaction maps from Argonaute CLIP-Seq and Degradome-Seq data.

Yang JH, Li JH, Shao P, Zhou H, Chen YQ, Qu LH.

Nucleic Acids Res. 2011 Jan;39(Database issue):D202-9. doi: 10.1093/nar/gkq1056. Epub 2010 Oct 30.

4.

Anti-Argonaute RIP-Chip shows that miRNA transfections alter global patterns of mRNA recruitment to microribonucleoprotein complexes.

Wang WX, Wilfred BR, Hu Y, Stromberg AJ, Nelson PT.

RNA. 2010 Feb;16(2):394-404. doi: 10.1261/rna.1905910. Epub 2009 Dec 30.

5.

PAR-CliP--a method to identify transcriptome-wide the binding sites of RNA binding proteins.

Hafner M, Landthaler M, Burger L, Khorshid M, Hausser J, Berninger P, Rothballer A, Ascano M, Jungkamp AC, Munschauer M, Ulrich A, Wardle GS, Dewell S, Zavolan M, Tuschl T.

J Vis Exp. 2010 Jul 2;(41). pii: 2034. doi: 10.3791/2034.

6.

Discovery of microRNA regulatory networks by integrating multidimensional high-throughput data.

Yang JH, Qu LH.

Adv Exp Med Biol. 2013;774:251-66. doi: 10.1007/978-94-007-5590-1_13.

PMID:
23377977
7.

Mapping Argonaute and conventional RNA-binding protein interactions with RNA at single-nucleotide resolution using HITS-CLIP and CIMS analysis.

Moore MJ, Zhang C, Gantman EC, Mele A, Darnell JC, Darnell RB.

Nat Protoc. 2014 Feb;9(2):263-93. doi: 10.1038/nprot.2014.012. Epub 2014 Jan 9.

8.

Murine cytomegalovirus encodes a miR-27 inhibitor disguised as a target.

Libri V, Helwak A, Miesen P, Santhakumar D, Borger JG, Kudla G, Grey F, Tollervey D, Buck AH.

Proc Natl Acad Sci U S A. 2012 Jan 3;109(1):279-84. doi: 10.1073/pnas.1114204109. Epub 2011 Dec 19.

9.

starBase v2.0: decoding miRNA-ceRNA, miRNA-ncRNA and protein-RNA interaction networks from large-scale CLIP-Seq data.

Li JH, Liu S, Zhou H, Qu LH, Yang JH.

Nucleic Acids Res. 2014 Jan;42(Database issue):D92-7. doi: 10.1093/nar/gkt1248. Epub 2013 Dec 1.

10.

Mapping in vivo protein-RNA interactions at single-nucleotide resolution from HITS-CLIP data.

Zhang C, Darnell RB.

Nat Biotechnol. 2011 Jun 1;29(7):607-14. doi: 10.1038/nbt.1873.

11.

A computational approach for identifying microRNA-target interactions using high-throughput CLIP and PAR-CLIP sequencing.

Chou CH, Lin FM, Chou MT, Hsu SD, Chang TH, Weng SL, Shrestha S, Hsiao CC, Hung JH, Huang HD.

BMC Genomics. 2013;14 Suppl 1:S2. doi: 10.1186/1471-2164-14-S1-S2. Epub 2013 Jan 21.

12.

The human transcriptome is enriched for miRNA-binding sites located in cooperativity-permitting distance.

Rinck A, Preusse M, Laggerbauer B, Lickert H, Engelhardt S, Theis FJ.

RNA Biol. 2013 Jul;10(7):1125-35. doi: 10.4161/rna.24955. Epub 2013 May 9.

13.

HITS-CLIP yields genome-wide insights into brain alternative RNA processing.

Licatalosi DD, Mele A, Fak JJ, Ule J, Kayikci M, Chi SW, Clark TA, Schweitzer AC, Blume JE, Wang X, Darnell JC, Darnell RB.

Nature. 2008 Nov 27;456(7221):464-9. doi: 10.1038/nature07488. Epub 2008 Nov 2.

14.

MicroRNA transfection and AGO-bound CLIP-seq data sets reveal distinct determinants of miRNA action.

Wen J, Parker BJ, Jacobsen A, Krogh A.

RNA. 2011 May;17(5):820-34. doi: 10.1261/rna.2387911. Epub 2011 Mar 9.

15.

Genome-wide analysis of miRNA-mRNA interactions in marrow stromal cells.

Balakrishnan I, Yang X, Brown J, Ramakrishnan A, Torok-Storb B, Kabos P, Hesselberth JR, Pillai MM.

Stem Cells. 2014 Mar;32(3):662-73. doi: 10.1002/stem.1531.

16.

Individual microRNAs (miRNAs) display distinct mRNA targeting "rules".

Wang WX, Wilfred BR, Xie K, Jennings MH, Hu YH, Stromberg AJ, Nelson PT.

RNA Biol. 2010 May-Jun;7(3):373-80.

17.

Argonaute CLIP--a method to identify in vivo targets of miRNAs.

Jaskiewicz L, Bilen B, Hausser J, Zavolan M.

Methods. 2012 Oct;58(2):106-12. doi: 10.1016/j.ymeth.2012.09.006. Epub 2012 Sep 27.

PMID:
23022257
18.

HITS-CLIP and PAR-CLIP advance viral miRNA targetome analysis.

Haecker I, Renne R.

Crit Rev Eukaryot Gene Expr. 2014;24(2):101-16. Review.

19.

Transcriptome-wide discovery of microRNA binding sites in human brain.

Boudreau RL, Jiang P, Gilmore BL, Spengler RM, Tirabassi R, Nelson JA, Ross CA, Xing Y, Davidson BL.

Neuron. 2014 Jan 22;81(2):294-305. doi: 10.1016/j.neuron.2013.10.062. Epub 2014 Jan 2.

20.

Analysis of the accessibility of CLIP bound sites reveals that nucleation of the miRNA:mRNA pairing occurs preferentially at the 3'-end of the seed match.

Marín RM, Voellmy F, von Erlach T, Vaníček J.

RNA. 2012 Oct;18(10):1760-70. doi: 10.1261/rna.033282.112. Epub 2012 Aug 22.

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