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Results: 1 to 20 of 73

Similar articles for PubMed (Select 19520768)

1.

PLAN2L: a web tool for integrated text mining and literature-based bioentity relation extraction.

Krallinger M, Rodriguez-Penagos C, Tendulkar A, Valencia A.

Nucleic Acids Res. 2009 Jul;37(Web Server issue):W160-5. doi: 10.1093/nar/gkp484. Epub 2009 Jun 11.

2.

PALM-IST: Pathway Assembly from Literature Mining - an Information Search Tool.

Mandloi S, Chakrabarti S.

Sci Rep. 2015 May 19;5:10021. doi: 10.1038/srep10021.

3.

DISEASES: text mining and data integration of disease-gene associations.

Pletscher-Frankild S, Pallejà A, Tsafou K, Binder JX, Jensen LJ.

Methods. 2015 Mar;74:83-9. doi: 10.1016/j.ymeth.2014.11.020. Epub 2014 Dec 5.

4.

BioTextQuest(+): a knowledge integration platform for literature mining and concept discovery.

Papanikolaou N, Pavlopoulos GA, Pafilis E, Theodosiou T, Schneider R, Satagopam VP, Ouzounis CA, Eliopoulos AG, Promponas VJ, Iliopoulos I.

Bioinformatics. 2014 Nov 15;30(22):3249-56. doi: 10.1093/bioinformatics/btu524. Epub 2014 Aug 6. Erratum in: Bioinformatics. 2015 Mar 15;31(6):979.

PMID:
25100685
5.

Mining the internet for drug information.

Shah N.

Clin Adv Hematol Oncol. 2014 Jun;12(6):391-3. No abstract available.

PMID:
25003570
6.

Event-based text mining for biology and functional genomics.

Ananiadou S, Thompson P, Nawaz R, McNaught J, Kell DB.

Brief Funct Genomics. 2015 May;14(3):213-30. doi: 10.1093/bfgp/elu015. Epub 2014 Jun 6.

7.

Effect of temporal relationships in associative rule mining for web log data.

Khairudin NM, Mustapha A, Ahmad MH.

ScientificWorldJournal. 2014 Jan 23;2014:813983. doi: 10.1155/2014/813983. eCollection 2014.

8.

wKinMut: an integrated tool for the analysis and interpretation of mutations in human protein kinases.

Izarzugaza JM, Vazquez M, del Pozo A, Valencia A.

BMC Bioinformatics. 2013 Nov 29;14:345. doi: 10.1186/1471-2105-14-345.

9.

CheNER: chemical named entity recognizer.

Usié A, Alves R, Solsona F, Vázquez M, Valencia A.

Bioinformatics. 2014 Apr 1;30(7):1039-40. doi: 10.1093/bioinformatics/btt639. Epub 2013 Nov 13.

10.

The potential of text mining in data integration and network biology for plant research: a case study on Arabidopsis.

Van Landeghem S, De Bodt S, Drebert ZJ, Inzé D, Van de Peer Y.

Plant Cell. 2013 Mar;25(3):794-807. doi: 10.1105/tpc.112.108753. Epub 2013 Mar 26.

11.

CellLineMiner: a knowledge portal for human cell lines.

Nakken S, Johansen M, Fillebeen J, Berge OP, Kirkerød H, Jenssen TK, Hovig E.

Bioinformation. 2012;8(22):1119-22. doi: 10.6026/97320630081119. Epub 2012 Nov 13.

12.

Finding biomarkers in non-model species: literature mining of transcription factors involved in bovine embryo development.

Turenne N, Tiys E, Ivanisenko V, Yudin N, Ignatieva E, Valour D, Degrelle SA, Hue I.

BioData Min. 2012 Aug 29;5(1):12. doi: 10.1186/1756-0381-5-12.

13.

MyMiner: a web application for computer-assisted biocuration and text annotation.

Salgado D, Krallinger M, Depaule M, Drula E, Tendulkar AV, Leitner F, Valencia A, Marcelle C.

Bioinformatics. 2012 Sep 1;28(17):2285-7. Epub 2012 Jul 12.

14.

Literature retrieval and mining in bioinformatics: state of the art and challenges.

Manconi A, Vargiu E, Armano G, Milanesi L.

Adv Bioinformatics. 2012;2012:573846. doi: 10.1155/2012/573846. Epub 2012 Jun 21.

15.

CellBase, a comprehensive collection of RESTful web services for retrieving relevant biological information from heterogeneous sources.

Bleda M, Tarraga J, de Maria A, Salavert F, Garcia-Alonso L, Celma M, Martin A, Dopazo J, Medina I.

Nucleic Acids Res. 2012 Jul;40(Web Server issue):W609-14. doi: 10.1093/nar/gks575. Epub 2012 Jun 12.

16.

CORNET 2.0: integrating plant coexpression, protein-protein interactions, regulatory interactions, gene associations and functional annotations.

De Bodt S, Hollunder J, Nelissen H, Meulemeester N, Inzé D.

New Phytol. 2012 Aug;195(3):707-20. doi: 10.1111/j.1469-8137.2012.04184.x. Epub 2012 May 31.

PMID:
22651224
17.

ANAP: an integrated knowledge base for Arabidopsis protein interaction network analysis.

Wang C, Marshall A, Zhang D, Wilson ZA.

Plant Physiol. 2012 Apr;158(4):1523-33. doi: 10.1104/pp.111.192203. Epub 2012 Feb 16.

18.

Mining and integration of pathway diagrams from imaging data.

Kozhenkov S, Baitaluk M.

Bioinformatics. 2012 Mar 1;28(5):739-42. doi: 10.1093/bioinformatics/bts018. Epub 2012 Jan 20.

19.

PHENOPSIS DB: an information system for Arabidopsis thaliana phenotypic data in an environmental context.

Fabre J, Dauzat M, Nègre V, Wuyts N, Tireau A, Gennari E, Neveu P, Tisné S, Massonnet C, Hummel I, Granier C.

BMC Plant Biol. 2011 May 9;11:77. doi: 10.1186/1471-2229-11-77.

20.

GenDrux: a biomedical literature search system to identify gene expression-based drug sensitivity in breast cancer.

Crasto C, Luo D, Yu F, Forero A, Chen D.

BMC Med Inform Decis Mak. 2011 May 5;11:28. doi: 10.1186/1472-6947-11-28.

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