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Items: 1 to 20 of 106

1.

AllerHunter: a SVM-pairwise system for assessment of allergenicity and allergic cross-reactivity in proteins.

Muh HC, Tong JC, Tammi MT.

PLoS One. 2009 Jun 10;4(6):e5861. doi: 10.1371/journal.pone.0005861.

2.

AllerTool: a web server for predicting allergenicity and allergic cross-reactivity in proteins.

Zhang ZH, Koh JL, Zhang GL, Choo KH, Tammi MT, Tong JC.

Bioinformatics. 2007 Feb 15;23(4):504-6. Epub 2006 Dec 6.

3.

Prediction of protein allergenicity using local description of amino acid sequence.

Tong JC, Tammi MT.

Front Biosci. 2008 May 1;13:6072-8.

PMID:
18508644
4.

Evaluation and integration of existing methods for computational prediction of allergens.

Wang J, Yu Y, Zhao Y, Zhang D, Li J.

BMC Bioinformatics. 2013;14 Suppl 4:S1. doi: 10.1186/1471-2105-14-S4-S1. Epub 2013 Mar 8.

5.

AllerTOP--a server for in silico prediction of allergens.

Dimitrov I, Flower DR, Doytchinova I.

BMC Bioinformatics. 2013;14 Suppl 6:S4. doi: 10.1186/1471-2105-14-S6-S4. Epub 2013 Apr 17.

6.

The value of position-specific scoring matrices for assessment of protein allegenicity.

Lim SJ, Tong JC, Chew FT, Tammi MT.

BMC Bioinformatics. 2008 Dec 12;9 Suppl 12:S21. doi: 10.1186/1471-2105-9-S12-S21.

7.

ALLERDB database and integrated bioinformatic tools for assessment of allergenicity and allergic cross-reactivity.

Zhang ZH, Tan SC, Koh JL, Falus A, Brusic V.

Cell Immunol. 2006 Dec;244(2):90-6. Epub 2007 Apr 30.

PMID:
17467675
8.

Computer prediction of allergen proteins from sequence-derived protein structural and physicochemical properties.

Cui J, Han LY, Li H, Ung CY, Tang ZQ, Zheng CJ, Cao ZW, Chen YZ.

Mol Immunol. 2007 Jan;44(4):514-20. Epub 2006 Mar 23.

PMID:
16563508
9.

Prediction of food protein allergenicity: a bioinformatic learning systems approach.

Zorzet A, Gustafsson M, Hammerling U.

In Silico Biol. 2002;2(4):525-34.

PMID:
12611632
10.

SORTALLER: predicting allergens using substantially optimized algorithm on allergen family featured peptides.

Zhang L, Huang Y, Zou Z, He Y, Chen X, Tao A.

Bioinformatics. 2012 Aug 15;28(16):2178-9. doi: 10.1093/bioinformatics/bts326. Epub 2012 Jun 12.

11.
12.

The value of short amino acid sequence matches for prediction of protein allergenicity.

Silvanovich A, Nemeth MA, Song P, Herman R, Tagliani L, Bannon GA.

Toxicol Sci. 2006 Mar;90(1):252-8. Epub 2005 Dec 7.

13.

Allergen Atlas: a comprehensive knowledge center and analysis resource for allergen information.

Tong JC, Lim SJ, Muh HC, Chew FT, Tammi MT.

Bioinformatics. 2009 Apr 1;25(7):979-80. doi: 10.1093/bioinformatics/btp077. Epub 2009 Feb 11.

14.

Statistical evaluation of local alignment features predicting allergenicity using supervised classification algorithms.

Soeria-Atmadja D, Zorzet A, Gustafsson MG, Hammerling U.

Int Arch Allergy Immunol. 2004 Feb;133(2):101-12. Epub 2004 Jan 21.

PMID:
14739578
15.

Bioinformatic methods for allergenicity assessment using a comprehensive allergen database.

Hileman RE, Silvanovich A, Goodman RE, Rice EA, Holleschak G, Astwood JD, Hefle SL.

Int Arch Allergy Immunol. 2002 Aug;128(4):280-91.

PMID:
12218366
16.

Prediction of RNA-binding residues in proteins from primary sequence using an enriched random forest model with a novel hybrid feature.

Ma X, Guo J, Wu J, Liu H, Yu J, Xie J, Sun X.

Proteins. 2011 Apr;79(4):1230-9. doi: 10.1002/prot.22958. Epub 2011 Jan 25.

PMID:
21268114
17.

Data mining of sequences and 3D structures of allergenic proteins.

Ivanciuc O, Schein CH, Braun W.

Bioinformatics. 2002 Oct;18(10):1358-64.

18.
19.

Performing IgE serum testing due to bioinformatics matches in the allergenicity assessment of GM crops.

Goodman RE.

Food Chem Toxicol. 2008 Oct;46 Suppl 10:S24-34. doi: 10.1016/j.fct.2008.07.023. Epub 2008 Jul 31.

PMID:
18715545
20.

EVALLER: a web server for in silico assessment of potential protein allergenicity.

Martinez Barrio A, Soeria-Atmadja D, Nistér A, Gustafsson MG, Hammerling U, Bongcam-Rudloff E.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W694-700. Epub 2007 May 30.

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